Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0547
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 32 0.32
At4g32230.1 68417.m04586 hypothetical protein 31 0.74
At5g48310.1 68418.m05968 expressed protein 30 1.7
At5g36740.1 68418.m04402 PHD finger family protein 30 1.7
At5g36670.1 68418.m04388 PHD finger family protein 30 1.7
At5g16300.1 68418.m01905 expressed protein 30 1.7
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 29 2.3
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 3.0
At2g39800.2 68415.m04887 delta 1-pyrroline-5-carboxylate synthet... 29 3.9
At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthet... 29 3.9
At5g10080.1 68418.m01168 aspartyl protease family protein contai... 27 9.1
At3g51760.1 68416.m05676 hypothetical protein hypothetical prote... 27 9.1
At2g26040.1 68415.m03127 Bet v I allergen family protein similar... 27 9.1
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 279 SCSVVPQG-NLCPISAMIVYANCSMRFGVPPMHTNLTSPNISTRSWEAAPKGQMVENILV 103
S ++P G NL + + +Y +CS P TN++ N++ + E P +EN++
Sbjct: 687 SLKILPTGFNLKSLDRLNLY-HCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLV- 744
Query: 102 HEFNVRVTQSDSAIW 58
EF + +SD W
Sbjct: 745 -EFRISKEESDEKQW 758
>At4g32230.1 68417.m04586 hypothetical protein
Length = 222
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 104 TKIFSTIWPLGAASHDLVEMFGDVKFVCMGGTPKRME 214
T+I +TI PL SH+LV FG + +GG R++
Sbjct: 165 TRIRTTISPLMGLSHELVRRFGSTIEIAIGGFSGRVK 201
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 23 CHSITTSYVTNTQMALSDCVTLTLNSWTK 109
CHSI+ Y + +A C+ L L W+K
Sbjct: 271 CHSISGQYAWQSLLAYDACIRLCLYEWSK 299
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 482 SDEAVDGALRNVLELTVLGKIVQRPAKLDRRLVR 583
+D VDG + NV+E+ K+++R + RR++R
Sbjct: 32 TDSLVDGNVENVIEIKDKKKVIEREILITRRVLR 65
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 482 SDEAVDGALRNVLELTVLGKIVQRPAKLDRRLVR 583
+D VDG + NV+E+ K+++R + RR++R
Sbjct: 32 TDSLVDGNVENVIEIKDKKKVIEREILITRRVLR 65
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 294 EK*LMSCSVVPQGNLCPISAMIVYANCSMRFGVPPMHTNLTSPNISTR-SWEAAPKGQ 124
E +M CS VP+ PISA + + + + +P +TS + S R SW+A G+
Sbjct: 944 ESNIMPCSTVPRFKYLPISAPALSSRSTNKVSIP-----VTSNDASARNSWKAFTNGE 996
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 104 TKIFSTIWPLGAASHDLVEMFGDVKFVCMGGTPKRMEQ---FAYTIMAEIGHKLPCGTTL 274
T IF PL A L E+F D + G R + F + + I + C T +
Sbjct: 280 TSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRVLIFDLSCLCAISLLITCPTLV 339
Query: 275 QDISHFSY 298
I HFSY
Sbjct: 340 TRIPHFSY 347
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 141 PPMILLRCLETSSLCAWAEH 200
PP ILL+C + +S C W H
Sbjct: 260 PPQILLKCPKEASFCLWLLH 279
>At2g39800.2 68415.m04887 delta 1-pyrroline-5-carboxylate synthetase
A / P5CS A (P5CS1) identical to SP:P54887:P5C1_ARATH
Length = 614
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 518 LELTVLGKIVQRPAKLDRRLVRELKALADPEDPYDTVTGKT 640
LE +++ ++V P K+ L ++ LAD EDP V KT
Sbjct: 248 LEESMVARLVMTPGKISS-LAASVRKLADMEDPIGRVLKKT 287
>At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthetase
A / P5CS A (P5CS1) identical to SP:P54887:P5C1_ARATH
Length = 717
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 518 LELTVLGKIVQRPAKLDRRLVRELKALADPEDPYDTVTGKT 640
LE +++ ++V P K+ L ++ LAD EDP V KT
Sbjct: 351 LEESMVARLVMTPGKISS-LAASVRKLADMEDPIGRVLKKT 390
>At5g10080.1 68418.m01168 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 27.5 bits (58), Expect = 9.1
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = +2
Query: 23 CHSITTSYVTNTQMALSDCVTLTLNSWTKIFSTIWPLGAASHDLVEMFGDVKFVCMGGTP 202
C+ + + +T+T S T LN + S+ + SH L + D + +P
Sbjct: 128 CNCVQCAPLTSTYY--SSLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCE------SP 179
Query: 203 KRMEQFAYTIMAEIGHKLPCGTTLQDISHFSY 298
K EQ YT+ G+ G ++DI H +Y
Sbjct: 180 K--EQCPYTVNYLSGNTSSSGLLVEDILHLTY 209
>At3g51760.1 68416.m05676 hypothetical protein hypothetical protein
F17M19.12 - Arabidopsis thaliana, EMBL:AC021665
Length = 228
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 334 RKYRANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVCELFHAFRCSAHAH 182
RK + +++ G +VR+ + L+P+ +C + +AF S+H H
Sbjct: 168 RKKKLSYLSGETVRQSCFSPKACGLHVLLPWSTKHRICGVKNAFSPSSHVH 218
>At2g26040.1 68415.m03127 Bet v I allergen family protein similar to
ribonucleases from {Panax ginseng} SP|P80890, SP|P80889,
SP|Q05736 Pathogenesis-related protein 1 (AOPR1)
{Asparagus officinalis}; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 190
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 427 EHRITDFRVVHQLYDFVKQDSDRRYAHTVTYRKYRANFIHG 305
EHR+ +++ V + +F+ QDS + Y TV Y + G
Sbjct: 118 EHRLKNYKSVTSVNEFLNQDSGKVY--TVVLESYTVDIPEG 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,688
Number of Sequences: 28952
Number of extensions: 342291
Number of successful extensions: 875
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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