Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0544
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.3  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.1  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 275 QWHRPYHPREAWQGRRALH 331
           QW +P  PRE    RR  H
Sbjct: 585 QWCKPCRPREQLTWRRNFH 603


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 275 QWHRPYHPREAWQGRRALH 331
           QW +P  PRE    RR  H
Sbjct: 477 QWCKPCRPREQLTWRRNFH 495


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 248 DSGHAVHLPQWHRPYHPREA-WQGRRALHEDTASCG 352
           D G   HLP  H  + P  A +Q    L ++    G
Sbjct: 398 DGGEVAHLPNTHMGHEPGAAYYQNENMLQKNAEYSG 433


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 248 DSGHAVHLPQWHRPYHPREA-WQGRRALHEDTASCG 352
           D G   HLP  H  + P  A +Q    L ++    G
Sbjct: 346 DGGEVAHLPNTHMGHEPGAAYYQNENMLQKNAEYSG 381


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 109 HLDAINCLST*SCQLIL 59
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 109 HLDAINCLST*SCQLIL 59
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,977
Number of Sequences: 336
Number of extensions: 3676
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)