Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0544
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 103 1e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 103 1e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 99 3e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.022
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 0.84
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 7.9
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 7.9
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 103 bits (248), Expect = 1e-22
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 231 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 407
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 408 KLGEYLITCG 437
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 103 bits (248), Expect = 1e-22
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 231 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 407
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 408 KLGEYLITCG 437
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 231 TSGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 407
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 408 KLGEYLITCG 437
+LG+YLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 156 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 248
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 221 ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 388
+ A W + + ++ +W R Y P W+ GRRA D S+ T PT
Sbjct: 14 LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73
Query: 389 GRICRGEVRRIFNYLWLLE 445
GR+ E +I ++++LLE
Sbjct: 74 GRVSGKE--QIKHFVYLLE 90
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 241 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 116
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 233 EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 343
E RRD + +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,964,892
Number of Sequences: 37544
Number of extensions: 400831
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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