Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0544
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   57   2e-08
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  32   0.37 
SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)              30   1.5  
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 29   3.5  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                29   4.6  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = +3

Query: 111 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 290
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+      TI G +Y+ L     
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63

Query: 291 --IIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGEYLITCGY 440
             I   KL   G  C+  T+QA+VI  YEE         +VVE+L +YL   GY
Sbjct: 64  SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +3

Query: 81  VDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 257
           VD+ L+ +  V KA+I G +G  +A S GF +   E   ++A    +   T   GV +  
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509

Query: 258 TRYIYLS-GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 434
           T+Y  +     H +  + G  G   + T Q ++I  Y E + P   ++V EKL +Y    
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569

Query: 435 GY 440
           G+
Sbjct: 570 GF 571


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
 Frame = +3

Query: 63  MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 212
           MSW  Y+D  L  ++  T      KA I G DG   W  +      ++  +E  KI   F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171

Query: 213 ENESLLT--SGGVTIAGTRYIYLSGTDH--IIRAKLGKVGVHCMKTQQAVVISLYEEPIQ 380
           +N+   +  S G+   G +Y +L   D   ++  K     +    ++ A+VI   +E  Q
Sbjct: 172 KNKDFTSFMSSGIHAEGEKYQFLREEDGKLVLGKKKDHGAITIQASKTALVIGHTKEGGQ 231

Query: 381 PQQAASVVEKLGEYLITCG 437
                  V  + EYL + G
Sbjct: 232 QGNTNKAVAVIAEYLESLG 250


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 189 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE 368
           ++ +V  F + +     G+      Y  +      +  K  K G+  +KT   ++++LY 
Sbjct: 1   MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60

Query: 369 EPIQPQQAASVVEKLG 416
           + + P       EKLG
Sbjct: 61  QEMSPSICVEASEKLG 76


>SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)
          Length = 179

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +3

Query: 75  DYVDKQLMASRCVTKAAIAGHDGN------VWAKSEG-FEISKD-EVAKIVAGFENESLL 230
           DY D  +  ++  T+  IA +DG        W  + G + + KD  VAK   G      +
Sbjct: 37  DYRDVVIYIAQNTTRTGIAVNDGQWHHLCVTWENTAGSWRLYKDGRVAKSGTGLSQGEQI 96

Query: 231 TSGGVTIAGTRYIYLSGTDHIIRAKLGKV 317
             GG  + G     L G  H  ++ +G++
Sbjct: 97  DGGGAVVLGNEQDMLGGGFHQTQSFIGEM 125


>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 350 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 234
           HSL C    +A LA +R   ++CAT    P A  RH+ T
Sbjct: 71  HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 350 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 240
           HSLLC    +A LA +R   ++CA     P A  RH+
Sbjct: 37  HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 84  DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 260
           D  LMA   +   A+A   G+ W+   G  I K    +++       + T+GGVTI GT
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 135 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 281
           H G  W  ++G  EI  D + ++   GF     L +GG  + G  Y  L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +2

Query: 344 SCGHFSL*RTHPTSAGR----ICRGEVRRIFNYLWLLEVEARRDLRVL*DNIFSTGK*VT 511
           +C  F + R HP  A +    + R   RR+  +L L+E+E  +DLR+  D+  +  K + 
Sbjct: 205 TCFRFRM-RYHPREAAQRQKELQRSVRRRLNCFLELMEMELSKDLRLEVDHSDAIVKFLD 263

Query: 512 AFCIFYKVIRGPFI 553
           A C  +  ++  F+
Sbjct: 264 ADCCMFTKLKTRFL 277


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 251
           D++ +Q+  S C+   A+A   G    K   F +  D   ++V   + ++L TS  + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,122,506
Number of Sequences: 59808
Number of extensions: 468220
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)