Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0544
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       35   0.31 
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    35   0.31 
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    33   0.94 

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 87  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 260
           KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 261 RYIYLSGT 284
               L GT
Sbjct: 224 VSSLLGGT 231


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 87  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 260
           KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 261 RYIYLSGT 284
               L GT
Sbjct: 224 VSSLLGGT 231


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 87  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 260
           KQ  AS  C++   A+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 261 RYIYLSGT 284
               L GT
Sbjct: 224 VSSLLGGT 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,764,708
Number of Sequences: 237096
Number of extensions: 2163484
Number of successful extensions: 3430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3430
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)