Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0543
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    29   0.049
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.8  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 133 SLSLCARGPGPSPSCTGRS*TPPISLGPVAERN-TVQLLCSCPPC 2
           S  L A G  PSP+  G    PP    P ++R  T +  C CP C
Sbjct: 253 SFGLHATGSAPSPTA-GAGGLPPQVPSPRSQRRYTGRATCDCPNC 296



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -1

Query: 438 TMSFTTAAAFLTVLIQKFVNNPGPFEHRSLIVDLVIDQSTFHVGSIWHWPEAQTW 274
           T S+ +   F     Q   +N     H++ ++  V   +T H+GS++     ++W
Sbjct: 111 TASYGSDLYFPGATSQPPTDNSHVHHHQTSLLGKVEGAATHHLGSVYSRHPYESW 165


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 301 DTANVESTLIYYKVNDKGSVLKWARVIDEF 390
           D+ +VE  + Y +  + G V  WA  +D+F
Sbjct: 491 DSESVEKKVNYVQEMNLGGVFIWATDLDDF 520


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 472 RCWESMVRGFRHHELHHCRCLSYGID 395
           RCWE  + G  + + ++  CL  G D
Sbjct: 533 RCWEVFMDGICNEDCNNPECLFDGRD 558


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 444 FGTMSFTTAAAFLTVLIQKFVN 379
           +GT +++    F+TV++  F+N
Sbjct: 170 YGTKTYSLFIVFMTVILPYFIN 191


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 444 FGTMSFTTAAAFLTVLIQKFVN 379
           +GT +++    F+TV++  F+N
Sbjct: 170 YGTKTYSLFIVFMTVILPYFIN 191


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 439 AENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQY 546
           A N+   + + G LG   + D+ +DDF      N+Y
Sbjct: 387 AGNKASYARAKG-LGGIAIVDITLDDFRGLCTGNKY 421


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 607 PQPYNNTEDLP 639
           PQPY N +D P
Sbjct: 18  PQPYMNAQDAP 28


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 189 EEAHQNRVEDKVK*QDLC 136
           EE  + R EDK K + LC
Sbjct: 544 EEEKKKREEDKAKFEGLC 561


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 494 SVMYQSMTSIPALQPTSTITNKPALA 571
           +++Y +M S    +PT + T +P  A
Sbjct: 388 NILYANMNSYSVPEPTISTTPRPEWA 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.134    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,391
Number of Sequences: 336
Number of extensions: 3894
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)