Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0543
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   2.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   2.6  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    27   3.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   6.0  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.0  

>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 103 PSPSCTGRS*TPPISLGPVAERNTVQLLCSCPP 5
           P P    RS TP   + P+   +T+QL+ SCPP
Sbjct: 33  PLPLTLSRS-TP---INPIIRSDTIQLVISCPP 61


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 199 LAVFYQTLDTKVPKW 243
           + V+Y+ LDTK+P+W
Sbjct: 834 IIVYYEKLDTKIPQW 848


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +1

Query: 487 KQVCDVPVDDFNPCTPANQY----NYEQAGPCVFLKLNKIYNWRPQPYNNTEDLPTNMPE 654
           K++CDV    F+    A  +    + ++    V  +  KI+ WR    N T+  PT +P+
Sbjct: 659 KKICDVAALQFSDAVTAVDFAPFFHNDELLLAVGTEAGKIFIWRCPRENLTKWYPTRLPD 718

Query: 655 DL--KQHIKTLSGKPDANT 705
            +   + I  +  KP   T
Sbjct: 719 HMAPMESINQILWKPTFET 737


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 493 VCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWRPQPYNNTEDLPTNMPED 657
           VCDV  D  NP  P   YN         +++  +    P    + + LPT +P +
Sbjct: 275 VCDVSCDTTNPNNPIPIYNVNTTFDHPTVEVKGVTTPPPLEVISIDHLPTLLPRE 329


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 VGFFAALLAVFYQTLDTKVPKWQLDSSIIG 267
           VGFF ++L   ++  D  V ++    +IIG
Sbjct: 293 VGFFVSVLDALFECFDVPVVQYMYQENIIG 322


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 541 QYNYEQAGPCVFLKLNKIYNWRPQPYNNTEDLPTNMPEDLKQHIKTLSGKPDAN 702
           +Y Y Q GP    +L+ + + + +P    + LP+N P  L      LS   + N
Sbjct: 126 RYAYSQTGPLRHRRLHYLQDNKIRPSKIPKSLPSNSPVRLPYISSLLSAVFEIN 179


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 416 AAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPAL 568
           AAV  ++     +HA  +  HSA S +  Y     +P + P+  I+  P L
Sbjct: 587 AAVDVMVAASIVHHAKTSLMHSAASSTPSYNGERIVPDV-PSPCISTNPNL 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,654
Number of Sequences: 5004
Number of extensions: 62953
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)