Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0543
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 31 0.89
10_08_0047 + 14430437-14430463,14430615-14430714,14431076-144311... 31 1.2
05_01_0482 + 4016784-4017323 30 1.6
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 29 2.7
07_01_0310 + 2209084-2209554 29 2.7
06_03_0739 + 24004629-24005219 29 2.7
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437... 29 4.8
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 29 4.8
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 29 4.8
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 28 6.3
02_05_0107 + 25897487-25898059 28 6.3
>11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 349 KGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSS 471
+GS+++ AR +DEFLNQ + GE + EN+ + S
Sbjct: 895 EGSIIRLARRLDEFLNQLKAAAQAVGEVN-LENKFGAASDS 934
>10_08_0047 +
14430437-14430463,14430615-14430714,14431076-14431153,
14431340-14431427,14431536-14431640,14431998-14432540,
14433023-14433157,14433256-14433364,14433578-14433726,
14433800-14434046
Length = 526
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 346 DKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSSGPLGE 486
D G KW ++ LN G G G G R P SP+ P+ E
Sbjct: 150 DNGPARKWVSLVRRTLNSLAGTGGGGGGGGGGGMRTP-SPAPDPVVE 195
>05_01_0482 + 4016784-4017323
Length = 179
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 486 LAEWSAAGRAWYAVFGTMSFTTAAAFLTVLI 394
L E G WY +F T++FT A A L L+
Sbjct: 63 LTEGQMRGIRWYIMFNTVTFTIALALLITLV 93
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 148 AGSLPSLSLCARGPGPSPSCTGRS*TPPI 62
+ SL +LSLC + P PSP + R P +
Sbjct: 4 SSSLSTLSLCTQSPSPSPVASARLVAPAV 32
>07_01_0310 + 2209084-2209554
Length = 156
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 395 INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPAL 568
+ TV AA VPK A +PA +V M ++PA+ PT+T+ PA+
Sbjct: 50 VPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAV-PTATLPPMPAV 106
>06_03_0739 + 24004629-24005219
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 466 SSGPLGEKQVCDVPVDDFNPCTPANQYNYE--QAGPCVFLKLNKIYNWR------PQPYN 621
++ +G+ ++C + + PC Q+ E AG + + WR P+P+
Sbjct: 50 NAAAVGKSKLCAIAISHM-PCGHCRQFLQEIRGAGGIRIIVTSSDAKWRTVSSLLPRPFG 108
Query: 622 NTEDLPTNMPEDLKQHIKTLSGKP 693
+ LP ++P LK H L G P
Sbjct: 109 PHDLLPKHVPLVLKPHDSPLVGNP 132
>11_08_0099 +
28342765-28342872,28343016-28343167,28343461-28343705,
28343790-28343921,28344047-28344973,28345057-28345187
Length = 564
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 436 GAENRVPCSPSSGPLGEKQVCDVP---VDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWR 606
G N V S P+ + ++P +DF P TP +++NY +GP +N +R
Sbjct: 385 GTINNVTFIMPSTPILQAHYYNIPGVFTEDF-PATPLHKFNYTGSGPKNLQTMNGTRVYR 443
Query: 607 PQPYN 621
PYN
Sbjct: 444 -LPYN 447
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = -1
Query: 456 WYAVFGTMSFTTAAAFLTVLIQKFVNNPGPFEHRSLIVDLVIDQSTFHVGSIWHWPEAQT 277
W + G M++ A+ + + F +VDL I T + +W AQ
Sbjct: 987 WSRLLGWMAYGVASGVIIFFLTSAALQHQAFRRGGEVVDLAILSGTAYTCVVWA-VNAQM 1045
Query: 276 WITADY*TI 250
+TA+Y T+
Sbjct: 1046 TVTANYFTL 1054
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 48 TGPREMGGVQDLPVQLGDGPGPRAHRLKLGKDPAIL 155
T +MGG+Q L Q+ GP+AH++ + P +
Sbjct: 517 TPSNQMGGMQPLHPQMNQMGGPQAHQMYNNQQPGAM 552
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 343 NDKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSSGP 477
N +G+ + R + E L ++ G+G+G A + SPSS P
Sbjct: 130 NFRGAAFIYNRFVREQLRKHGLAGAGAGAAASVGKKDKSSPSSSP 174
>02_05_0107 + 25897487-25898059
Length = 190
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +1
Query: 316 ESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGS------GSGEAHGAENRVPCSPSSGP 477
+ ++ ++ + +VLKW R + + R++GS GEA + +V G
Sbjct: 64 QQQIVVHQRGGEKAVLKWGRSLARRMRLLRRRGSERLLEESPGEATTPKGQVAVYVGGGE 123
Query: 478 LGEKQVCDVPVDDFN 522
GE VPV FN
Sbjct: 124 PGESMRYVVPVVYFN 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,671,382
Number of Sequences: 37544
Number of extensions: 503409
Number of successful extensions: 1166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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