Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0543
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 5e-20
SB_25359| Best HMM Match : p450 (HMM E-Value=0) 29 3.7
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 29 4.9
SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3) 29 4.9
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0) 29 4.9
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 28 6.4
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 28 6.4
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 95.1 bits (226), Expect = 5e-20
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Frame = +1
Query: 73 FRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQLD 252
F+ FLYN E G+V+GR G SWAK GFFAA+L++F TL + +L
Sbjct: 24 FKTFLYNKEKGEVMGRNGQSWAKIGLFFLVFYLCLAGFFAAMLSIFLSTLPDRADGPKLT 83
Query: 253 SSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSGEA 432
I G P L P+P +E Y N S I+ FLNQY ++G + +
Sbjct: 84 QYIAG-KPVL--NPVPSN-KIEG----YDPNKASSYSSHVSDINSFLNQYVRQGGANKDQ 135
Query: 433 HGAENRVPCSPSSGPLGEKQVCDVPVDDFNPC---TPANQYNYEQAGPCVFLKLNKIYNW 603
+ S P K+ C + + PC +Y ++ PC FL++NK++N+
Sbjct: 136 FAPDFCNGTSGEPRPKDAKKQCRFDLTNLGPCYKNETGFKYGFDTGSPCFFLRMNKVFNF 195
Query: 604 RPQP 615
P+P
Sbjct: 196 VPEP 199
>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
Length = 1084
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 313 VESTLIYYKVNDKGSVLKWARVI-----DEFLNQYRKKGSGSG-EAHGAENRVPCSPSSG 474
V+ST I Y + KG+ ++ R+I E +N R G +A + NR+ +PSS
Sbjct: 415 VDSTTILYWIKGKGTWSQFVRLIHNPAISEKINPNRITREPFGLKADASLNRITLNPSSA 474
Query: 475 PLGEKQVCDVP 507
GE ++P
Sbjct: 475 NPGETLYVNIP 485
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 519 QSLHSSQPVQLRTSRPLRLPQAQ*DIQLEAAAVQQHRGPTHEHARGSQAAHQDTVW*TRR 698
Q HSSQ V+ R R LRLP D ++ A Q H + EH + V+ R
Sbjct: 204 QDFHSSQHVRPRIQRDLRLP----DHRVRAPERQPH-VLSGEHQEDEEKGDHGVVFHGAR 258
Query: 699 QH 704
QH
Sbjct: 259 QH 260
>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
Length = 244
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 SNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEF-LNQYRKKGSGSGEAHGAE 444
+ P G R A E L YY D+G V + V E L++Y S +HG
Sbjct: 34 NRPTRGERRFAYWALAECILAYYVGTDEG-VSEVLHVAGEKRLHRYYYTSSNDSHSHGET 92
Query: 445 NRVPCSPSSGPLGEKQVCD 501
+ S LGE+ +C+
Sbjct: 93 DSNSSGQSDVSLGEEAICN 111
>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 229
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 120 HRLKL-GKDPAILPYLLRDFGGLLRCS--ASGI 209
H LK+ KDP + L+ FGG++ CS ASGI
Sbjct: 142 HALKIVSKDPRVKVILVNIFGGIVDCSVVASGI 174
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 533 GVQGLKSSTGTSQTCFSPSGPL 468
G +G SS GT Q +SP GP+
Sbjct: 479 GTRGRTSSVGTGQQSYSPQGPV 500
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 122 VRPRTWPVSELYRKILNASHFPRSGGGA*YCSATLF 15
+ P++WP +++YR++L+ GG Y F
Sbjct: 405 IYPKSWPENDIYRQVLSILLMVNVGGALLYLGLATF 440
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 397 QYRKKGSGSGEAHGAENRVPCSPSSGPLGEKQVCDV 504
+Y GS S E ++ +PC P+GE+++ DV
Sbjct: 1636 KYNMAGSVSHEPAAHDSVMPCKIGVKPMGEREMSDV 1671
>SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 574 RRKGRLVRNCTGWLECRD*SHRLVHHRLASRRVVRCWESMVRGFRHH 434
+ +GR +RNCT C R H+ + +E++ G HH
Sbjct: 34 KTRGRNIRNCTSGTLCCRVGRRAARHQAIAPLYTCRYEAVWAGLDHH 80
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 136 PSLSLCARGPGPSPSCTGRS*TPPISLGPVA 44
P+ + A G GP PS TG++ P +S PVA
Sbjct: 2311 PTTTSVAMGAGPPPSATGQA-LPVMSPAPVA 2340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.134 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,396,482
Number of Sequences: 59808
Number of extensions: 523781
Number of successful extensions: 1096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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