Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0543
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical pr... 107 6e-24
Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical p... 29 3.2
L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68753-2|CAD56618.1| 480|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68753-1|CAA92989.1| 499|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 27 9.9
>Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical
protein F55F3.3 protein.
Length = 317
Score = 110 bits (264), Expect = 1e-24
Identities = 63/203 (31%), Positives = 105/203 (51%)
Frame = +1
Query: 67 EAFRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQ 246
E F FLYN + G VLGRTG+SW + FF L++F +TLD KVP++
Sbjct: 24 ETFAQFLYNKDKGTVLGRTGTSWCQITVFYIIFYIFLSAFFIGCLSIFLRTLDPKVPRFY 83
Query: 247 LDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSG 426
+IIG NPG+G++P N +STLI + + D S + + +D +L++Y K + +
Sbjct: 84 GKGTIIGVNPGVGYQPWL-KENPDSTLIKFNLQDSKSWEPYVKQLDNYLSKY-KNTNETR 141
Query: 427 EAHGAENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWR 606
+ ++N + + D+ + + C +QY Y+ PCV + LN++ WR
Sbjct: 142 DCGASDNNDALETDTDTFPCR--FDLGLFEKANCGAKDQYGYKSGKPCVAVSLNRLIGWR 199
Query: 607 PQPYNNTEDLPTNMPEDLKQHIK 675
P Y++ ++PE++K K
Sbjct: 200 PVNYDD-----GSVPEEIKGRYK 217
>Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical
protein C17E4.9 protein.
Length = 320
Score = 107 bits (258), Expect = 6e-24
Identities = 61/203 (30%), Positives = 98/203 (48%)
Frame = +1
Query: 67 EAFRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQ 246
E FR FLYN + G V+GRTG SW + F+ L +F +TLD KVP++
Sbjct: 27 ETFREFLYNKKNGTVMGRTGKSWFQIIVFYIIFYAFLAAFWLTCLTIFMKTLDPKVPRFY 86
Query: 247 LDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSG 426
+IIG NPG+G++P +STLI Y + D+ S + + +L +Y + +
Sbjct: 87 GKGTIIGVNPGVGYQPWL-KERPDSTLIKYNLRDQKSYKAYLEQMKTYLTKYDSNATETR 145
Query: 427 EAHGAENRVPCSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWR 606
E ++ + L + D+ V D C+ + + Y+ PCV + LN++ WR
Sbjct: 146 ECGAGDSNDDLEKNPDALPCR--FDLSVFD-KGCSEKSDFGYKSGKPCVIISLNRLIGWR 202
Query: 607 PQPYNNTEDLPTNMPEDLKQHIK 675
P Y ++PE++K K
Sbjct: 203 PTDYQE-----NSVPEEVKDRYK 220
>Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical
protein C43F9.6 protein.
Length = 374
Score = 41.1 bits (92), Expect = 8e-04
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Frame = +1
Query: 193 ALLAVFYQTLDTKVPKWQLDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWA 372
AL+ + LD + P + D S +G P + F P P + T K ++ +++
Sbjct: 123 ALVWFNFSRLDRQYPIYFGDGSFLGGAPKVSFDPNPRQFLEDGT----KNAMSWNIYEFS 178
Query: 373 RVIDEFLN--QYRKKGSGSGEAHGAENRVPCSPSSGPLGEKQVCDVP-VDDFNPCTPA-- 537
++ + Q KK SG + C + + + C + DF CT +
Sbjct: 179 TYVNYLIRYKQVLKKYSGGIGKQKVKKEEMCKNQT--MTRENACKFDRLTDFGECTLSLD 236
Query: 538 ---NQYNYEQAGPCVFLKLNKIYNWRP--QPYNNTEDLPT 642
+ Y + PC+ LKLNKI W P P N P+
Sbjct: 237 NLERGFGYSKGQPCIMLKLNKIVGWVPNLSPSKNKTKCPS 276
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 336 VIDQSTFHVGSIWHWPEAQTWITAD 262
V+ + T +G +W W Q W+T D
Sbjct: 840 VVPKGTPMIGPMWKWDHTQDWLTID 864
>Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical
protein F17C11.7b protein.
Length = 515
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +1
Query: 331 YYKVNDKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRV----PCSPSSGPLGEKQVC 498
+ + + G L + R+I E L++Y + AHG N + P PSS P G +
Sbjct: 49 FNRKTESGDYLTFPRIIQELLSRYSVRKLTVTMAHGRWNLIGWGLPPQPSS-PTGAQVFA 107
Query: 499 DVPVDDFNPCTPANQYNYEQAGPCVFLK 582
+ D ++ E +FLK
Sbjct: 108 EFEADQQEDADERMKFLVEALNGVLFLK 135
>L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical
protein ZK688.3 protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 241 WQLDSSIIGSNPGLGFRPMPDTANVESTLIYYKVNDK 351
W L S GS P GF P+ D N ++ K+N K
Sbjct: 113 WFLAKSFDGSCPIGGFLPVSDIPNPHDVELFCKINGK 149
>Z68753-2|CAD56618.1| 480|Caenorhabditis elegans Hypothetical
protein ZC518.1b protein.
Length = 480
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 489 LLAEWSAAGRAWYAVFGTMSFTTAAAFLTVLIQKFVNNP 373
LL W G W AVFG ++ TA L I +++ +P
Sbjct: 20 LLLRWR--GSVWKAVFGQLAVWTAVFLLISCIYRYMLSP 56
>Z68753-1|CAA92989.1| 499|Caenorhabditis elegans Hypothetical
protein ZC518.1a protein.
Length = 499
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 489 LLAEWSAAGRAWYAVFGTMSFTTAAAFLTVLIQKFVNNP 373
LL W G W AVFG ++ TA L I +++ +P
Sbjct: 20 LLLRWR--GSVWKAVFGQLAVWTAVFLLISCIYRYMLSP 56
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/139 (18%), Positives = 47/139 (33%)
Frame = +1
Query: 277 GLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVP 456
G+G RP + L + + W + + N Y+++G G P
Sbjct: 26 GMGMRPHEEETRQIMNLDSQQTHSSSPTSSWNQPYGQMSNPYQQRGPSLYAPPGP----P 81
Query: 457 CSPSSGPLGEKQVCDVPVDDFNPCTPANQYNYEQAGPCVFLKLNKIYNWRPQPYNNTEDL 636
+GP G V + P P ++ + P + ++ + QPY NT+
Sbjct: 82 VMHQNGPPG---VVPTSNPYYQPPVPPQHHHMQPQAPMMSPGMHG--QQQQQPYYNTQSP 136
Query: 637 PTNMPEDLKQHIKTLSGKP 693
T P + + P
Sbjct: 137 LTGTPPSMSYGTPQIPAPP 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.134 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,990
Number of Sequences: 27780
Number of extensions: 374162
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -