Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    26   0.31 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.54 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.72 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.7  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 316 NIASNKSGDWMAVVLPVFGRISFRDRCQLRRPNEYVT 206
           N ASN SGD  +  L  F R S    C   R N+Y T
Sbjct: 348 NSASNSSGDAQSTSLRPFSRWSL---CNSARSNKYPT 381


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +2

Query: 161 YMMVGLIPA-GALIFYCNVFIGPAQLTPIPEGYTPKYWEYHRHP 289
           Y  V   PA  A IF+      P    P P  YT  Y  YH +P
Sbjct: 137 YAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYTHHYARYHPYP 180


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 IPEGYTPKYWEYHRHPITRFIARYIHNNPQQDY 340
           IPE    K  +YH   +  F A  ++N+ +++Y
Sbjct: 124 IPESLVIKLVDYHHQLLGHFGATKVYNSMKREY 156


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 343 LIILLWIVVNIASNKSGDWMAVVL 272
           +I++L ++VN+  N   DW  V L
Sbjct: 1   MILVLLVIVNLGLNGLIDWYTVCL 24


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 227 AQLTPIPEGYTPKYWEYHRH 286
           AQ+ P  + + P+ W +H H
Sbjct: 36  AQMGPEQQMWEPQMWHHHSH 55


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 227 AQLTPIPEGYTPKYWEYHRH 286
           AQ+ P  + + P+ W +H H
Sbjct: 36  AQMGPEQQMWEPQMWHHHSH 55


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 257 TPKYWEYHRHPITRFIARYIHNNPQQDYE 343
           T + WE    P T      ++  P+Q+YE
Sbjct: 127 TERNWEIREKPYTPPRLPTVYGKPEQNYE 155


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 261 PNTGSTTAIQSPD 299
           P T S++A++SPD
Sbjct: 220 PTTSSSSALESPD 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,100
Number of Sequences: 336
Number of extensions: 3954
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)