Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    28   1.0  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    26   4.1  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   7.2  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   7.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   9.5  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 542 FNPCSHHQYGYTIHHRFSYSYVSI 471
           FN C  ++  Y  HH + + YV++
Sbjct: 108 FNQCIENRINYAKHHNYGFEYVNV 131


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 299 FIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQ 433
           F+A   H  PQ++ E F  + +++  + + R  +K+ +KK A  Q
Sbjct: 410 FVANLYH--PQREQETFKMYKNDDDTKKRKRKKKKKEVKKKARIQ 452


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 434 DYQAYYYKPMVNKYLRMNKKTGDELYNRIGDDYKD 538
           DY     KP+  K +R   KTG   Y  +GD Y D
Sbjct: 48  DYYQIIQKPICYKMMRNKAKTGK--YLSMGDFYDD 80


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 273 SQYLGVYPSGIGVNCAGP 220
           +Q +G Y  GIG+NC  P
Sbjct: 92  AQLVGPYVDGIGINCGCP 109


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 152 AYP*ICAIAIWMAAVPLFFLHDCLLRFS 69
           AYP IC ++I+++ +P+F      +R+S
Sbjct: 306 AYPSICDLSIFLSLLPIFNKVQDRMRYS 333


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 285 WRWYSQYLGVYPSGIGVNCAGPMN 214
           W W   Y+G+   G G  CAG ++
Sbjct: 451 WHWGPTYVGLGFIGFGWGCAGDIS 474


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 347 FMHFLDEEQQRIKLRALEKEIIKKMAERQDY 439
           F HFL    QR++   LE + I K  E+  +
Sbjct: 605 FQHFLQRPTQRLQRYTLELDTILKHTEQSSW 635


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 43  NTECDFHHRENLKRQSWRKN 102
           N+ CD +++E L+++SW ++
Sbjct: 101 NSACDRYYQEALRKKSWSRS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,918
Number of Sequences: 5004
Number of extensions: 62385
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)