Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0540
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 32 0.35
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 32 0.35
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 31 1.1
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 29 4.3
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 28 5.6
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 28 5.6
08_02_0225 + 14469037-14469064,14470004-14470215,14470324-144704... 28 7.5
02_05_1027 - 33602170-33602622,33602912-33603013 28 7.5
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 27 9.9
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 8 NLVK---NSLKSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLH 157
N+VK +SLK NK + T KT+K S +TM + P K+ ++H
Sbjct: 327 NIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVH 379
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 44 IQNVTFTTAKTLKG-SHGERTMALQPSRWQWHKFKDMLHFYMMVGLI 181
++NV A+ L + GE +AL+ W+WH F+D+ H Y M G +
Sbjct: 526 LENVIKFPAEVLTPLTAGEIPVALK-QEWKWHLFEDVKHLYHMNGTL 571
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/81 (19%), Positives = 37/81 (45%)
Frame = +2
Query: 29 KSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYC 208
++P + + AK + G++ L RW WH+F + ++++ ++ + + C
Sbjct: 105 RAPPSSVDSPYVRAKQAQDILGQK---LYKKRWDWHRFG--VKLFLLISILLSFCFLELC 159
Query: 209 NVFIGPAQLTPIPEGYTPKYW 271
N+ + P + P P +W
Sbjct: 160 NLNVFPV-IEKDPNKAVPLFW 179
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 166 HVKVQHILKFVPLPSGWLQCHCSFSMTAF*GF 71
H K QH+L FV P G+L+C C + GF
Sbjct: 106 HPKHQHLLFFVK-PGGFLRCKCDICGKSVKGF 136
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 347 FMHFLDEEQQRIKLRALEKEIIKKM-AERQDYQAYYYKPMVNKYLRMNK 490
F H + ++++L +I + E D A+YY P++N NK
Sbjct: 327 FPHLYNNRPRKVRLGVYHTPMIMYIKTEDPDLPAFYYDPLINPITSTNK 375
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 293 TRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 418
T+ + + N P DY +F H DE+ + +EK++I K
Sbjct: 83 TQTCRKSLRNRPPIDYSRFEHISDEDSD---VEIVEKDVIAK 121
>08_02_0225 +
14469037-14469064,14470004-14470215,14470324-14470433,
14470498-14470765,14470878-14471087,14471162-14471230,
14473346-14473591,14473672-14473740,14473808-14473871,
14474468-14474583
Length = 463
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 311 YIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKYLRMNK 490
Y PQ D E +H L+++ LRA K ++ ++ + K LR++
Sbjct: 43 YNRTKPQTDMETQIHQLEQDAYCSVLRA-----FKAQSDAISWEKEGLITELRKELRVSD 97
Query: 491 KTGDELYNRI-GDD 529
K EL NR+ GDD
Sbjct: 98 KEHRELLNRVNGDD 111
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 229 RRPNEYVTVEYKGTGRYQSNHHVKVQH-ILKFVPL 128
++ N TVEY +Q++HH QH +LK++ L
Sbjct: 119 QKSNSPPTVEYYSRNPHQNSHHDHEQHGVLKYLDL 153
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 362 DEEQQRI--KLRALEKEIIKKMAERQDYQAYYYKPMVNKYLRMNKKTGDELYNRIGDD 529
DEE +RI K+ +L + + K+AE+++ + KP+ N R + + GDD
Sbjct: 316 DEEDRRIWKKMSSLVERMCWKIAEKRNQTVIWVKPLNNDCYRSRAPGTNPPLCKRGDD 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,674,182
Number of Sequences: 37544
Number of extensions: 392282
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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