Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          30   1.9  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.5  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     29   4.4  
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 248 EGYTPKYWEYHRHPITRFIAR---YIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 418
           E  +P  W  H++ +     R   YI    + DY+ F HF +  +   + R+L K+ +KK
Sbjct: 21  EDDSPIDWSEHKYTLDHLFFRDNDYIKRGTE-DYKDFWHFFERYESFQRKRSLSKKDVKK 79


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 225 RRN*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNLCISLMKN 371
           RR   L L D+R N+  T  ++S   L  ++       + NLC+SL+++
Sbjct: 491 RRLISLDLSDVRLNSIETATLRSAGQLAVLYVLAGGLGLNNLCVSLVRS 539


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 149 MLHFYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGY 256
           +L F++++G++   +LIFYC   I   +   IP  +
Sbjct: 432 LLIFFLLIGVVLFASLIFYCEKKIPGTKFVDIPSSF 467


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 TPIPEGYTPKYWEYHRHPITRFIARYIHNNPQ 331
           TP+P  +TP+     R PI  +    +HN+P+
Sbjct: 282 TPLPAYFTPRVIHSPRTPIPAYFTPRVHNSPR 313


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/43 (27%), Positives = 28/43 (65%)
 Frame = +2

Query: 335  DYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPM 463
            DY++ +  +D+E+ R++ R L+++  K+  +R++ +A   K M
Sbjct: 905  DYDEILRSVDDERNRVQ-RLLDEDEAKRKRQREEEEAKRKKKM 946


>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 296 RFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 475
           R +A+ + +   +DY + +   D+E++R +    EK+  ++ AER+  QA   K  V K 
Sbjct: 31  RSLAQTLRDEQDEDYRRSLQ-ADQEKERRRREEQEKKQKEEEAERRKKQAILEKLEVIKM 89

Query: 476 LRMN 487
              N
Sbjct: 90  ATNN 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,450,660
Number of Sequences: 59808
Number of extensions: 455217
Number of successful extensions: 1255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)