Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070682-1|AAL48153.1|  186|Drosophila melanogaster RH17657p pro...   207   1e-53
AY070637-1|AAL48108.1|  186|Drosophila melanogaster RH02211p pro...   207   1e-53
AE014296-2100|AAF49954.1|  186|Drosophila melanogaster CG9762-PA...   207   1e-53
AE014297-581|AAN13347.1|  432|Drosophila melanogaster CG14605-PB...    29   5.5  
AE014297-580|AAF54046.3|  452|Drosophila melanogaster CG14605-PA...    29   5.5  

>AY070682-1|AAL48153.1|  186|Drosophila melanogaster RH17657p
           protein.
          Length = 186

 Score =  207 bits (505), Expect = 1e-53
 Identities = 87/160 (54%), Positives = 119/160 (74%)
 Frame = +2

Query: 47  QNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGP 226
           +N      + + G HG   M ++PSR+QW KFKD+LHFY+M+G+IP  AL+ Y N+F+GP
Sbjct: 27  RNALHQQLRRMGGDHGHHQMIIKPSRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGP 86

Query: 227 AQLTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKE 406
           AQL  IPEGY PK+WEY +HPI+RFI+RYI N+ QQ+YEK +H+L EE ++ ++R LE E
Sbjct: 87  AQLAEIPEGYEPKHWEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDE 146

Query: 407 IIKKMAERQDYQAYYYKPMVNKYLRMNKKTGDELYNRIGD 526
           + +KM+ER DYQAYYY+P V KY R++K+  DEL    GD
Sbjct: 147 VRRKMSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD 186


>AY070637-1|AAL48108.1|  186|Drosophila melanogaster RH02211p
           protein.
          Length = 186

 Score =  207 bits (505), Expect = 1e-53
 Identities = 87/160 (54%), Positives = 119/160 (74%)
 Frame = +2

Query: 47  QNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGP 226
           +N      + + G HG   M ++PSR+QW KFKD+LHFY+M+G+IP  AL+ Y N+F+GP
Sbjct: 27  RNALHQQLRRMGGDHGHHQMIIKPSRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGP 86

Query: 227 AQLTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKE 406
           AQL  IPEGY PK+WEY +HPI+RFI+RYI N+ QQ+YEK +H+L EE ++ ++R LE E
Sbjct: 87  AQLAEIPEGYEPKHWEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDE 146

Query: 407 IIKKMAERQDYQAYYYKPMVNKYLRMNKKTGDELYNRIGD 526
           + +KM+ER DYQAYYY+P V KY R++K+  DEL    GD
Sbjct: 147 VRRKMSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD 186


>AE014296-2100|AAF49954.1|  186|Drosophila melanogaster CG9762-PA
           protein.
          Length = 186

 Score =  207 bits (505), Expect = 1e-53
 Identities = 87/160 (54%), Positives = 119/160 (74%)
 Frame = +2

Query: 47  QNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGP 226
           +N      + + G HG   M ++PSR+QW KFKD+LHFY+M+G+IP  AL+ Y N+F+GP
Sbjct: 27  RNALHQQLRRMGGDHGHHQMIIKPSRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGP 86

Query: 227 AQLTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKE 406
           AQL  IPEGY PK+WEY +HPI+RFI+RYI N+ QQ+YEK +H+L EE ++ ++R LE E
Sbjct: 87  AQLAEIPEGYEPKHWEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDE 146

Query: 407 IIKKMAERQDYQAYYYKPMVNKYLRMNKKTGDELYNRIGD 526
           + +KM+ER DYQAYYY+P V KY R++K+  DEL    GD
Sbjct: 147 VRRKMSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD 186


>AE014297-581|AAN13347.1|  432|Drosophila melanogaster CG14605-PB,
           isoform B protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 550 SISLILVVITNTVIQFITGFLIHT*VFVDHRFIVIGLVVLAL 425
           S+S+ + +IT  V+  I  + +H  +FV   F ++GLVVL +
Sbjct: 381 SLSVFIALITYPVL--INDYGVHVTMFVSASFCLLGLVVLGI 420


>AE014297-580|AAF54046.3|  452|Drosophila melanogaster CG14605-PA,
           isoform A protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 550 SISLILVVITNTVIQFITGFLIHT*VFVDHRFIVIGLVVLAL 425
           S+S+ + +IT  V+  I  + +H  +FV   F ++GLVVL +
Sbjct: 401 SLSVFIALITYPVL--INDYGVHVTMFVSASFCLLGLVVLGI 440


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,078,368
Number of Sequences: 53049
Number of extensions: 694739
Number of successful extensions: 1629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)