Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0540
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-12|AAK31457.2| 180|Caenorhabditis elegans Hypothetical p... 62 3e-10
AL132859-2|CAB60488.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.71
AC024882-3|AAF60934.1| 340|Caenorhabditis elegans Seven tm rece... 31 0.94
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 28 5.0
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr... 28 6.7
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81047-12|CAB60283.1| 322|Caenorhabditis elegans Hypothetical p... 27 8.8
U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein. 27 8.8
U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1 p... 27 8.8
M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2... 27 8.8
>U29535-12|AAK31457.2| 180|Caenorhabditis elegans Hypothetical
protein C25H3.9a protein.
Length = 180
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/136 (22%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +2
Query: 77 LKGSHGERTMALQPSRWQWHKFKDMLHFYMM-VGLIPAGALIFYCNVFIGPAQLTPIP-E 250
++ SH +P + ++ KD+ HFY + +G +P + Y ++ G +L P E
Sbjct: 24 IRSSHAA-VFRKRPGQLIVNRIKDVCHFYFIGIGFLPVLFCLAYNHIVYGTCELKDYPTE 82
Query: 251 GYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAER 430
G P +W++ R PI ++ A++ + + +E+ + + +++ + R +E+ + ER
Sbjct: 83 GPAPHHWQFERTPIRQWWAKWFGVSDVEHHERNLAYYEKQGILARWRQIEQRVKHLEGER 142
Query: 431 QDYQAYYYKPMVNKYL 478
DY+ + Y+P+ + ++
Sbjct: 143 WDYKGWSYQPVSSTWV 158
>AL132859-2|CAB60488.1| 315|Caenorhabditis elegans Hypothetical
protein Y39C12A.3 protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 14 VKNSLKSPNKIQNVTFTTAKTLKGSHGE 97
VK L+ PNKIQ+V +++ K LKG+ GE
Sbjct: 282 VKIGLRKPNKIQSVRYSSRK-LKGTFGE 308
>AC024882-3|AAF60934.1| 340|Caenorhabditis elegans Seven tm
receptor protein 155 protein.
Length = 340
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 231 N*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNL 350
N L+ KDI N G TT++ P LL+ F T R ++NL
Sbjct: 194 NQDLTAKDIMANLGLTTSMVIPILLIVFFGTKTYRKVKNL 233
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 365 EEQQRIKLRALEK--EIIKKMAERQDYQAYYYKPMVNKYLRMNKK 493
E +Q+ K +EK EI KK R+ Y +P +NK + +N+K
Sbjct: 138 ETEQKSKESKVEKKEEIKKKTVRRETNFITYKRPGINKNVEVNRK 182
>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
protein F02C9.3 protein.
Length = 1064
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 204 TVTYSLGRRN*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRI 338
TV L R+ H D++P+ G+T IQ L + FT+ R+
Sbjct: 523 TVGVKLAHRDLHTMTLDVQPSNGTTVPIQFQILHVFPFTSERKRM 567
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 44 IQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAG---ALIFYCNV 214
+QN K +K +G+R L + H +D + Y++V L+P G L CN
Sbjct: 744 LQNTDGANYKCIKIENGDRMPQLVARALEKHLIEDDKNTYLLVQLLPRGGEFVLPDNCNP 803
Query: 215 FIGPA 229
F A
Sbjct: 804 FYAMA 808
>Z81047-12|CAB60283.1| 322|Caenorhabditis elegans Hypothetical
protein C41G6.14 protein.
Length = 322
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 158 FYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGYT 259
FY++ I L+F+ V + P L+PI GY+
Sbjct: 49 FYLLGFQISCVLLVFHATVLMEPLSLSPICAGYS 82
>U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein.
Length = 418
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 256 ISFRDRCQLRRPNEYVTVEYKGTGRYQSNHHVKVQHIL 143
+ F RCQ ++ E VT+ GR Q +H + H++
Sbjct: 48 LEFALRCQGQQKTECVTIPRSLDGRLQISHRKALPHVI 85
>U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1
protein.
Length = 418
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 256 ISFRDRCQLRRPNEYVTVEYKGTGRYQSNHHVKVQHIL 143
+ F RCQ ++ E VT+ GR Q +H + H++
Sbjct: 48 LEFALRCQGQQKTECVTIPRSLDGRLQISHRKALPHVI 85
>M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2
protein.
Length = 418
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 256 ISFRDRCQLRRPNEYVTVEYKGTGRYQSNHHVKVQHIL 143
+ F RCQ ++ E VT+ GR Q +H + H++
Sbjct: 48 LEFALRCQGQQKTECVTIPRSLDGRLQISHRKALPHVI 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,157
Number of Sequences: 27780
Number of extensions: 351724
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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