Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.28 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -2

Query: 322 VVNIASNKSGDWMAVVLPVFGRISFRDRCQLRRPNEYVTVEYKGTGRYQSNHHVKVQHIL 143
           + N+A+  SGD+  V       + +  + Q++ P  ++ VE       + N HV +    
Sbjct: 676 ITNLAAEHSGDYTCVAANPAAEVRYTAKLQVKVPPRWI-VEPTDVS-VERNKHVALHCQA 733

Query: 142 KFVPLPS 122
           + VP P+
Sbjct: 734 QGVPTPT 740


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 202 EYKGTGRYQSNHHVKVQHI 146
           EYK   RY   H+V+ +H+
Sbjct: 260 EYKKDRRYDQLHNVEEKHL 278


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 5   INLVKNSLKSPNKIQNVTFT 64
           IN++    K+P K++N+  T
Sbjct: 271 INMLMELQKNPQKLENIKLT 290


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 RWQWHKFKDMLHFYMMV 172
           +W  HK K+++ +Y+++
Sbjct: 278 KWFLHKMKNIIDYYLVL 294


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 125 IWMAAVPLFF 96
           IW+A VPL+F
Sbjct: 860 IWLAFVPLYF 869


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,504
Number of Sequences: 438
Number of extensions: 4715
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)