Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0540
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61780.1 68416.m06931 expressed protein ; expression supporte...    33   0.17 
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim...    31   0.88 
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    29   3.6  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    28   6.2  

>At3g61780.1 68416.m06931 expressed protein ; expression supported by
            MPSS
          Length = 1121

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
 Frame = +2

Query: 8    NLVKNSLK---SPNKIQNVTFTTAKTLKGS--HGERTMALQPSRWQWHKFKDMLHFYMMV 172
            N VK S K   S NKI+   F  AK+  G   H E+        W  + + +   F  +V
Sbjct: 587  NAVKGSSKQINSSNKIEEHNFKFAKSSSGGTEHIEKEEPSGKGNWIENNYHE---FEPVV 643

Query: 173  GLIPAGALIFYCNVFIG----PAQLTPIPEGYTPKY---WEYHRHPITRFIARYIHNNPQ 331
              + AG    Y     G    P  +  I E Y  +Y    E+ +    R I  ++ +N  
Sbjct: 644  EKMRAGFRDNYMAAREGETREPGTIAEIAELYRSEYNDELEWMKDEKLRDIVFHVRDNEL 703

Query: 332  QDYEKFMHFLDEEQQRIKLRALEKEIIKK 418
               + F H +D+E + + L+ LEK++ K+
Sbjct: 704  AGRDPF-HLIDDEDKAMFLQGLEKKVEKE 731


>At5g09740.1 68418.m01128 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 284 HPITRFIARYIHNNPQQDYEKFMHFLD 364
           HP+     R IHN  Q DYE ++H+ +
Sbjct: 76  HPVKVIERRRIHNGGQNDYEYYVHYTE 102


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 347 FMHFLDEEQQRIKLRALEKEIIKKM-AERQDYQAYYYKPMVNKYLRMNKKTGDELYNRIG 523
           F H  +   +++KL      +I  +  E  D  A+YY P+++     NK+  +       
Sbjct: 362 FPHLYNNRPRKVKLCVYHSPMIMYIKTEDPDLPAFYYDPLIHPISNTNKEKRERKVYDDE 421

Query: 524 DDY 532
           DD+
Sbjct: 422 DDF 424


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/40 (25%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 332 QDYEKFMHFLDEEQQRIK-LRALEKEIIKKMAERQDYQAY 448
           +D+ ++  ++++E  ++K +  +EK + K + ER+D ++Y
Sbjct: 562 EDHRRYSVYINKEDVKLKRVNVIEKLMSKTLREREDMRSY 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,822
Number of Sequences: 28952
Number of extensions: 318188
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)