Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0539
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    26   0.32 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.0  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   5.2  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   5.2  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   6.9  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 302 LPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLI 171
           +P +   S P+ F+P+  LP   K   +CV   LS ++    L+
Sbjct: 199 IPDVIKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCYLERTELL 242


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 602  TDTSPTSSVIDPLTKNQTLAY 540
            T+  PTS  I P  +NQ L++
Sbjct: 1247 TEVKPTSQKIVPNLRNQNLSH 1267


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 464 ILSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKI 291
           IL  KS  + +  +   +II  L CL+ A+  ++  S     F      AY+  +  I
Sbjct: 112 ILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHIITMI 169


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 464 ILSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKI 291
           IL  KS  + +  +   +II  L CL+ A+  ++  S     F      AY+  +  I
Sbjct: 112 ILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHIITMI 169


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 464 ILSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKI 291
           IL  KS  + +  +   +II  L CL+ A+  ++  S     F      AY+  +  I
Sbjct: 112 ILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHIITMI 169


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 530 IRRPDVVPFQLFPVAPSEIRKVI 462
           ++RP  VPF L P   + I++++
Sbjct: 307 LKRPYPVPFALRPAVDATIQEML 329


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 491 LERAERGQHLDALCQTNKLTFDF 559
           LE  +R  H D  CQ N    D+
Sbjct: 104 LELFKRLIHFDTKCQENSTVIDY 126


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 491 LERAERGQHLDALCQTNKLTFDF 559
           LE  +R  H D  CQ N    D+
Sbjct: 122 LELFKRLIHFDTKCQENSTVIDY 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,512
Number of Sequences: 336
Number of extensions: 3052
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)