Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0539
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   2.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   4.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.9  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 261 PNFNLTLPIQSARDLC 214
           PN NLTLP+ SA  +C
Sbjct: 125 PNHNLTLPLMSAEAIC 140


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 266 FRPISILPFLSKVLEICVHKQL 201
           F  + +LPFL+KV E C H  L
Sbjct: 117 FFTLDLLPFLNKVCECCNHMLL 138


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 284 PSVPNHFRPISILPFLSKVLE 222
           P+V  H+RPI+I   + K+L+
Sbjct: 819 PTVSRHYRPITIFEAIRKILK 839


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 545  AYLSGIRRPDVVPFQLFPVAPSEIRKVILSIKSNAVGYDNICRRMII 405
            A L GIR PD +   L    PS   +VI  + S A  Y+ + + +++
Sbjct: 1110 AQLDGIRIPDAIESYLKADDPSNYSEVI-ELASRAGKYEELIKYLLM 1155


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 380 AIYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISIL 246
           A+  I N +L S    F   ++ V+ALP +  PS P+H    S L
Sbjct: 371 ALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSL 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,869
Number of Sequences: 5004
Number of extensions: 55460
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)