Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0539
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 39 0.003
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 38 0.010
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 33 0.27
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 30 1.9
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.5
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 29 2.5
10_07_0004 - 11722867-11723532,11724778-11724825 29 3.3
03_05_0122 - 21025469-21026719 29 3.3
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 29 3.3
01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498 29 4.4
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/106 (28%), Positives = 48/106 (45%)
Frame = -2
Query: 320 RAYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
RAY+ + K + + +RPIS+ K+L + +L R +I Q+GF G
Sbjct: 970 RAYIVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLR--MIHLDQTGFLKG 1027
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILLSI 3
L+ T I+ TI+V +DF+ AF++V L I
Sbjct: 1028 RCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKI 1073
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 37.5 bits (83), Expect = 0.010
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = -2
Query: 317 AYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGH 138
+++ +PK N FRPIS++ K++ + +L I L+S GF G
Sbjct: 371 SFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYGFIKG- 427
Query: 137 STISALLKVTGDIRVGLEESKITILVL-VDFSNAFNTVCHDILLSI 3
TI + ++SK I++L +DF AF+T+ H +LS+
Sbjct: 428 KTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSV 473
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 296 KIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
K+ +P + FRPIS+ L K+ + +L F+ ++S FQS F PG
Sbjct: 177 KVHNPEHLSKFRPISLCNVLYKIASKVLANRLKLFL--PDIVSEFQSAFVPG 226
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 290 PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFI 189
P+ +VP H+ +LPF ++ + V +Q +RFI
Sbjct: 258 PEKTVPQHYCDTRLLPFPQRMRKPSVDEQFARFI 291
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.5 bits (63), Expect = 2.5
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Frame = -2
Query: 377 IYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLS 198
I + NF SG P + +PK P +RPIS+ + KV+ C+ +L
Sbjct: 931 ILAVRNF-FQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLR 989
Query: 197 RFIFNNSLISPFQSGFRPGHS-TISALL--KVTGDIRVGLEESKITILVLVDFSNAFNTV 27
+ + L+S QS F G T +ALL + I+ + + +D S A++ V
Sbjct: 990 PIL--DDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRV 1047
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 299 PKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQ 159
P+ DPS N + LPF+ + V LS + F N+++S Q
Sbjct: 299 PQTDDPSQKNTLLVLKFLPFMIGWFSLSVPSGLSIYWFTNNILSTAQ 345
>10_07_0004 - 11722867-11723532,11724778-11724825
Length = 237
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 335 PFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFI 189
PF W A+ +A +P+ +VP + +LPF + + V +Q + F+
Sbjct: 5 PFGWLLAFAKA-KGLPEKTVPQEYCYTRLLPFPQRSRKPSVDEQFAHFV 52
>03_05_0122 - 21025469-21026719
Length = 416
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 608 ISTDTSPTSSVIDPLTKNQTLAYLSGIRRPDVVPFQLFPVAPSEIRKVILSIKSNA 441
I+T SPT PL+ + L L R P P + APS++ + S+ S A
Sbjct: 4 ITTHLSPTLKPPPPLSLHPHLPLLRRHRHPSSRPISVSAAAPSDLLASVESVASAA 59
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 388 RQSRIVIIMRRHMLSYPTALDLMESITFLISEGATGKS*KGTTSGRLMPDK*ANV*FLVK 567
R + +M HML YPT ME + + + G K G L+ D+ V LV
Sbjct: 65 RHRNMAKLMFIHMLGYPTHFGQMECLKLIAAAGYPEKR-IGYLGLMLLLDERQEVLMLVT 123
Query: 568 GSITEDVGE-----VSVEII*LNNIWNVQTSR 648
S+ +D+ V + + L NI + + +R
Sbjct: 124 NSLKQDLNHSNQFIVGLALCALGNICSAEMAR 155
>01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498
Length = 401
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 290 PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFI 189
P+ +VP + +LPFL ++ + V +Q +RF+
Sbjct: 216 PEKTVPQEYCDTRLLPFLQQMRKPSVDEQFARFV 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,828
Number of Sequences: 37544
Number of extensions: 360843
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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