Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0539
(669 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 86 4e-17
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 86 4e-17
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 79 4e-15
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 79 5e-15
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 78 1e-14
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 76 5e-14
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 75 7e-14
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 75 7e-14
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 75 7e-14
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 74 2e-13
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 74 2e-13
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 74 2e-13
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 74 2e-13
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 74 2e-13
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 74 2e-13
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 73 4e-13
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 72 8e-13
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 70 3e-12
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 70 3e-12
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 68 1e-11
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 66 4e-11
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 61 1e-09
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 55 8e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 51 2e-06
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 41 0.001
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 34 0.20
AE014296-365|AAF47576.2| 451|Drosophila melanogaster CG13923-PA... 29 5.7
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 86.2 bits (204), Expect = 4e-17
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Frame = -2
Query: 509 PFQLFPVAPSEIRKVILSIKS--NAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEF 336
P + F P E+ KVI + + GYD I RM+I + C + I + N G F
Sbjct: 425 PQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYF 484
Query: 335 PFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQ 159
P W+++ + +PK D + P+ +RPIS+L LSK+ E + ++S + N+ + Q
Sbjct: 485 PQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQ 544
Query: 158 SGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
GFR H TI + ++T +IR E + + +D + AF+ V D LL
Sbjct: 545 FGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLL 594
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 86.2 bits (204), Expect = 4e-17
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Frame = -2
Query: 509 PFQLFPVAPSEIRKVILSIKS--NAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEF 336
P + F P E+ KVI + + GYD I RM+I + C + I + N G F
Sbjct: 425 PQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYF 484
Query: 335 PFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQ 159
P W+++ + +PK D + P+ +RPIS+L LSK+ E + ++S + N+ + Q
Sbjct: 485 PQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQ 544
Query: 158 SGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
GFR H TI + ++T +IR E + + +D + AF+ V D LL
Sbjct: 545 FGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLL 594
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 79.4 bits (187), Expect = 4e-15
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Frame = -2
Query: 509 PFQL-FPVAPSEIRKVILSIKS----NAVGYDNICRRMIITILDCLLPAIYHIINFSLDS 345
P Q+ P+ P + +++ +IKS + G DN+C + + + + I N L
Sbjct: 427 PLQMSLPIKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRV 486
Query: 344 GEFPFLWRRAYVRALPKIPDPSV-PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLIS 168
FP W+ A + + K P P +RPIS+L LSK+ E + +L+ + ++
Sbjct: 487 QFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILP 546
Query: 167 PFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILLS 6
Q GFR GHST+ + ++T I ++ + V +D AF+ V HD L+S
Sbjct: 547 DHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLIS 600
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 79.0 bits (186), Expect = 5e-15
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = -2
Query: 485 PSEIRKVI---LSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRA 315
P EI K+I LS K + GYD I MII + + I + N G FP W+
Sbjct: 435 PKEITKIIKDNLSPKKSP-GYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMM 493
Query: 314 YVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGH 138
+ +PK + +V + +RPIS+L +SK+ E C+ +L++ +++I Q GFR H
Sbjct: 494 KIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESH 553
Query: 137 STISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
TI + ++T +IR E + V +D S AF+ V D L+
Sbjct: 554 GTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLM 596
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 77.8 bits (183), Expect = 1e-14
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Frame = -2
Query: 479 EIRKVILSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRAL 300
EI + K + G D + M+ + L + I N L +G++P WR A + +
Sbjct: 441 EIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPI 500
Query: 299 PKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGHSTISA 123
K PS N +RPIS+L L K LE + ++L+ FI ++LIS Q F+ HST+ A
Sbjct: 501 SKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHSTMDA 560
Query: 122 LLKVTGDIRVGLEESKITILVLVDFSNAFNTV-CHDIL 12
LL++ L ++ DF AF+ V H +L
Sbjct: 561 LLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVL 598
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 5e-14
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
PV +E+ +I S++ A G DN+ + II + + I N L +G FP W+
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 317 AYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
A + +PK P N +RPIS+L LSK+LE + K+L I Q GFR
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H L +VT I +E + +D + AF+ V HD LL
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLL 646
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 75.4 bits (177), Expect = 7e-14
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
PV +E+ +I S++ A G DN+ + II + + I N L +G FP W+
Sbjct: 36 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 95
Query: 317 AYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
A + +PK P N +RPIS+L LSK+LE + K+L I Q GFR
Sbjct: 96 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 155
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H L +VT I +E + +D + AF+ V HD LL
Sbjct: 156 HGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLL 199
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.4 bits (177), Expect = 7e-14
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
PV +E+ +I S++ A G DN+ + II + + I N L +G FP W+
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 317 AYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
A + +PK P N +RPIS+L LSK+LE + K+L I Q GFR
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H L +VT I +E + +D + AF+ V HD LL
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLL 646
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.4 bits (177), Expect = 7e-14
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
PV +E+ +I S++ A G DN+ + II + + I N L +G FP W+
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 317 AYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
A + +PK P N +RPIS+L LSK+LE + K+L I Q GFR
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H L +VT I +E + +D + AF+ V HD LL
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLL 646
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 74.1 bits (174), Expect = 2e-13
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Frame = -2
Query: 380 AIYHIINFS---LDSGEFPFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICV 213
AI HI+N + L +G FP W+ A + + K P P +RPIS+L LSK+LE +
Sbjct: 496 AINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLI 555
Query: 212 HKQLSRFIFNNSLISPFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFN 33
+L +F+ ++ + Q GFR G +TI LK+ I+ ++ + LV +D AF+
Sbjct: 556 KLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFD 615
Query: 32 TVCHDILL 9
TV HD LL
Sbjct: 616 TVWHDGLL 623
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 74.1 bits (174), Expect = 2e-13
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Frame = -2
Query: 380 AIYHIINFS---LDSGEFPFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICV 213
AI HI+N + L +G FP W+ A + + K P P +RPIS+L LSK+LE +
Sbjct: 444 AINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLI 503
Query: 212 HKQLSRFIFNNSLISPFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFN 33
+L +F+ ++ + Q GFR G +TI LK+ I+ ++ + LV +D AF+
Sbjct: 504 KLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFD 563
Query: 32 TVCHDILL 9
TV HD LL
Sbjct: 564 TVWHDGLL 571
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 73.7 bits (173), Expect = 2e-13
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 364 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 423
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P SV P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 424 AQVKMILK-PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 482
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 483 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 527
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 73.7 bits (173), Expect = 2e-13
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P SV P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 540 AQVKMILK-PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 643
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 73.7 bits (173), Expect = 2e-13
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 442 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 501
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P SV P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 502 AQVKMILK-PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 560
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 561 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 605
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 73.7 bits (173), Expect = 2e-13
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P SV P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 540 AQVKMILK-PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 643
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 72.9 bits (171), Expect = 4e-13
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ +E+ + I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 492 PITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 551
Query: 317 AYVRALPKIPDPS-VPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
A V+ + K S P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 552 AQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 611
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 612 HGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 655
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 71.7 bits (168), Expect = 8e-13
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I + + I N L G +P W+
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P SV P +RPIS+L LSK+ E + K+L R I Q GFR
Sbjct: 540 AQVKMILK-PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H T + +VT I E + V +D S AF+ V H+ LL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 643
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 70.1 bits (164), Expect = 3e-12
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P+ E+ I ++K S A G D I ++I T+ + I N L G +P W+
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 539
Query: 317 AYVRALPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRP 144
A V+ + K P S P +RPIS+L LSK+ E + K+L + I Q GFR
Sbjct: 540 AQVKMILK-PGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRK 598
Query: 143 GHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
H + + +VT I E + V +D S AF+ V H+ LL
Sbjct: 599 EHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLL 643
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 69.7 bits (163), Expect = 3e-12
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = -2
Query: 494 PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P P E+ +VI+ +N A G+D IC + + + I + N + FP+ W+
Sbjct: 435 PFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKL 494
Query: 317 AYVRALPKIPDPS-VPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPG 141
+ + K P P +RPIS+LP +SKV E + ++ + + Q GFR G
Sbjct: 495 GIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAG 554
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCH 21
H T+ L +V I + + + +D AF+ V H
Sbjct: 555 HCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWH 594
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Frame = -2
Query: 509 PFQL-FP---VAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDS 345
PFQ+ P V E++ +I + A G D + R I + D L + I N LD
Sbjct: 230 PFQMSLPPSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDV 289
Query: 344 GEFPFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLIS 168
G FP W+ A + + K P+ + +RPIS+LP L K++E + +L I
Sbjct: 290 GYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIP 349
Query: 167 PFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
FQ GFR H T L +V +E + + +D AF+ V H LL
Sbjct: 350 KFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLL 402
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 66.1 bits (154), Expect = 4e-11
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 2/176 (1%)
Frame = -2
Query: 530 IRRPDVVPFQLFPVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIINFS 354
+ P + L V E++ +I + A G D + R I + D L + I N
Sbjct: 425 LESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSV 484
Query: 353 LDSGEFPFLWRRAYVRALPKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNS 177
LD G FP W+ A + + K P+ + +RP S+LP L K++E + +L
Sbjct: 485 LDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTK 544
Query: 176 LISPFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILL 9
I FQ GFR H T L +V +E + + +D AF+ V H LL
Sbjct: 545 AIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLL 600
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 61.3 bits (142), Expect = 1e-09
Identities = 36/135 (26%), Positives = 65/135 (48%)
Frame = -2
Query: 413 MIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISILPFLS 234
MII + C + I + N G FP W+++ + +PK +RPIS+L LS
Sbjct: 1 MIIELPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLS 60
Query: 233 KVLEICVHKQLSRFIFNNSLISPFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLV 54
K+ E + ++S + ++ + +Q F H I + ++T +IR E + + +
Sbjct: 61 KLFEKGLLLRISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFL 120
Query: 53 DFSNAFNTVCHDILL 9
D + AF+ V D L+
Sbjct: 121 DVAQAFDRVWLDGLM 135
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 55.2 bits (127), Expect = 8e-08
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Frame = -2
Query: 509 PFQLFPVAPS-EIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYH-IINFSLDSGE 339
P FP S E+ + I+ N A G D I +I+ P ++ L G
Sbjct: 395 PASDFPCITSCEVVEAAKRIRPNKAPGIDGI-PGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 338 FPFLWRRAYVRALPKIPDPS-VPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPF 162
FP W++ + L K P+ VP +RP+ +L + K+ E ++ ++ + + +
Sbjct: 454 FPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQ 513
Query: 161 QSGFRPGHSTISALLKVTGDIRVGLE-------ESKITILVLVDFSNAFNTVCHDILL 9
Q GFR G ST+ AL VT R L+ K ++ +D NAFNT I+L
Sbjct: 514 QYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIIL 571
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 50.8 bits (116), Expect = 2e-06
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = -2
Query: 479 EIRKVILSIKSNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRAL 300
E+ + ++K A G + I +MI I + N +S P ++ + + +
Sbjct: 437 ELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNS-HIPQAYKTSLIIPI 495
Query: 299 PKI-PDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGHSTISA 123
K D + + +RPIS+ ++K+L+ + K+L + N+LI+ Q GF+ G ST
Sbjct: 496 LKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDC 555
Query: 122 LLKVTGDIRVGLEESKI-TILVLVDFSNAFNTV-CHDIL 12
LL V D + +SK+ T LV +DFS AF+ V H I+
Sbjct: 556 LLYV--DYLI--TKSKMHTSLVTLDFSRAFDRVGVHSII 590
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 41.1 bits (92), Expect = 0.001
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 3/154 (1%)
Frame = -2
Query: 479 EIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRA 303
E+ + +KS + G D I + + + + + + + G FP W+ V +
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 302 LPKIPDPSV--PNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGHSTI 129
L K PD P+ +R I +LP KVLE + ++ + +Q GFR G
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEG---CRWQFGFRQGRCVE 554
Query: 128 SALLKVTGDIRVGLEESKITILVLVDFSNAFNTV 27
A V VG ++ + VDF AF+ V
Sbjct: 555 DAWRHVKSS--VGASAAQYVLGTFVDFKGAFDNV 586
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 33.9 bits (74), Expect = 0.20
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = -2
Query: 368 IINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFI 189
I+N L G P R A +PK P FRPIS+ L + L + +L
Sbjct: 381 IMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRL---- 436
Query: 188 FNNSL-ISPFQSGFRPGHSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCH 21
N+S+ P Q GF P V +R + + + +D S AF+++ H
Sbjct: 437 -NSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSH 492
>AE014296-365|AAF47576.2| 451|Drosophila melanogaster CG13923-PA
protein.
Length = 451
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 644 DVWTFQIL----FN*MISTDTSPTSSVIDPLTKNQTLAYLSGIRRPDVVPFQLFPVAPSE 477
D W ++I +N + + + PLT+ AY+ IR PD P L +
Sbjct: 381 DNWRYRIFLYARYNSKLQDEEAQNPRNFKPLTRTDKQAYIMWIRNPDTAPPDL-----DK 435
Query: 476 IRKVILSIKSNAV 438
+R V +++ +AV
Sbjct: 436 MRNVFCNLEESAV 448
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,203,096
Number of Sequences: 53049
Number of extensions: 585516
Number of successful extensions: 1202
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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