Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0539
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 75 6e-14
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 66 3e-11
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 66 3e-11
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 31 0.98
AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.98
Z96047-8|CAC42278.1| 507|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical pr... 30 1.7
U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 30 1.7
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 30 1.7
AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 30 1.7
AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical ... 28 5.2
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr... 27 9.1
AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical ... 27 9.1
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 74.5 bits (175), Expect = 6e-14
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Frame = -2
Query: 449 SNAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKIP-DPSVP 273
S A+G D I + I + C + ++ N SL + P W++A V +PK DP++
Sbjct: 343 SAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIA 402
Query: 272 NHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISP-FQSGFRPGHSTISALLKVTGDIR 96
+ +RPIS+L ++K+LE + K++ NS+ SP Q GF+P HST +A+++VT DI
Sbjct: 403 SSYRPISLLSPIAKLLEKAILKRIK-----NSIESPAHQHGFKPEHSTTTAVIQVTNDII 457
Query: 95 VGL---EESKITILVLVDFSNAFNTV-----CHDIL 12
GL + I+ +D AF+ V C+D++
Sbjct: 458 GGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLM 493
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 65.7 bits (153), Expect = 3e-11
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Frame = -2
Query: 494 PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P P EIR V+ S + A G D I + + D ++ I N L S P W+
Sbjct: 546 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 605
Query: 317 AYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGH 138
+ + K D ++RPI +LP L KV C+ ++ R + + Q+GFR
Sbjct: 606 SKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE--QAGFRRSF 663
Query: 137 STISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDIL 12
STI + + + VG E LV +DF AF++V H +
Sbjct: 664 STIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 705
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 65.7 bits (153), Expect = 3e-11
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Frame = -2
Query: 494 PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P P EIR V+ S + A G D I + + D ++ I N L S P W+
Sbjct: 285 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 344
Query: 317 AYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGH 138
+ + K D ++RPI +LP L KV C+ ++ R + + Q+GFR
Sbjct: 345 SKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE--QAGFRRSF 402
Query: 137 STISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDIL 12
STI + + + VG E LV +DF AF++V H +
Sbjct: 403 STIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 444
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 63.7 bits (148), Expect = 1e-10
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 1/162 (0%)
Frame = -2
Query: 494 PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRR 318
P P +IR + S + A G D I + + D ++ I N L S P W+
Sbjct: 375 PFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 434
Query: 317 AYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSLISPFQSGFRPGH 138
+ + K D ++RPI +LP L KV C+ ++ R + + Q+GFR
Sbjct: 435 SKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE--QAGFRRSF 492
Query: 137 STISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDIL 12
STI + + + VG E LV +DF AF+TV H +
Sbjct: 493 STIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAI 534
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 512 VPFQLFPVAPSEIRKVILSIKSNAVG---YDNICRRMIITILDCLLPAIYHIINFSLDSG 342
VP L ++ ++ I S S+ + Y + ++I I C PA++ ++N L+
Sbjct: 463 VPATLSLISKDSVQSEIFSFISHLIDFCHYSILFSNLVIAIHPCQFPAVFLVLNIFLNFS 522
Query: 341 EFPFLW 324
++W
Sbjct: 523 SIIYIW 528
>AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical
protein Y82E9BL.15 protein.
Length = 273
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = -2
Query: 137 STISALLKVTGDIRVGLEESKITIL---VLVDFSNAFNTVCHDIL 12
STI L + GDIR G+ E+ +T+ V ++F++A N+V HDIL
Sbjct: 78 STIDRLGILYGDIRFGIWENSVTMNSDGVDLEFTDA-NSVTHDIL 121
>Z96047-8|CAC42278.1| 507|Caenorhabditis elegans Hypothetical
protein DY3.4b protein.
Length = 507
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILLSI 3
H+ + KV+ ++ + SKI I D S F+TV HD+L+SI
Sbjct: 251 HTIRDSCKKVSDFLKKNSQNSKI-IGYTADVSKCFSTVNHDVLISI 295
>Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical
protein DY3.4a protein.
Length = 561
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 140 HSTISALLKVTGDIRVGLEESKITILVLVDFSNAFNTVCHDILLSI 3
H+ + KV+ ++ + SKI I D S F+TV HD+L+SI
Sbjct: 305 HTIRDSCKKVSDFLKKNSQNSKI-IGYTADVSKCFSTVNHDVLISI 349
>U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane
receptor protein.
Length = 525
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -2
Query: 446 NAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 267
NAV ++++ + C IY + + S + + Y A+PK+P P++P
Sbjct: 453 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 509
Query: 266 FR 261
R
Sbjct: 510 VR 511
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -2
Query: 446 NAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 267
NAV ++++ + C IY + + S + + Y A+PK+P P++P
Sbjct: 457 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 513
Query: 266 FR 261
R
Sbjct: 514 VR 515
>AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell
migration protein1, isoform a protein.
Length = 525
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -2
Query: 446 NAVGYDNICRRMIITILDCLLPAIYHIINFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 267
NAV ++++ + C IY + + S + + Y A+PK+P P++P
Sbjct: 453 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 509
Query: 266 FR 261
R
Sbjct: 510 VR 511
>AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical
protein C41D11.6 protein.
Length = 852
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Frame = -2
Query: 353 LDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIFNNSL 174
L +FP LWR + + + P+V I + + H L + NN +
Sbjct: 712 LTEDDFPILWREVFTEVVQSVNRPNVRGTHPAI-----IDAARHLNAHGLLPSPMLNNEI 766
Query: 173 ISPFQSGFR---PGHSTISALLKV-TGDIRVGLEESKITILVLVDFSNAFNTV 27
++ ++ P H+ +AL+K+ I +G S T L + F++ N +
Sbjct: 767 RVRCKAPYKTEPPAHTIWTALMKIHETAIIIGTTASIHTALNDIGFASKANEI 819
>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
protein F59F3.1 protein.
Length = 1227
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 333 RKLSRVKREVNNMINCR*ETV*DSYNHATTYVVISHRIRFNGKYHFSYLRGGNW 494
+KL K+ V+ CR + N TY++ + YHFS+ +G W
Sbjct: 189 KKLYSEKQIVDVNFECRYKK---EENQTATYIITEKEASSDDGYHFSWEKGFQW 239
>AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical
protein B0524.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 407 ITILDCLLPAIYHIINFSLDSGEFPFLWRRAYV 309
I ++DCL+ + YH + S +G+ P L AY+
Sbjct: 254 IDLIDCLMASCYHPMYSSGLNGKAPILRGEAYI 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,056
Number of Sequences: 27780
Number of extensions: 300444
Number of successful extensions: 680
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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