Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0539
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm...    31   0.92 
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    31   0.92 
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    31   0.92 
At4g18870.1 68417.m02783 heat shock transcription factor family ...    29   3.7  
At4g29450.1 68417.m04204 leucine-rich repeat protein kinase, put...    28   4.9  
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ...    28   4.9  
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    28   6.5  
At4g36120.1 68417.m05141 expressed protein                             28   6.5  
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi...    27   8.5  

>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
           gamma-adaptin GI:2765190 from [Homo sapiens]; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 867

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = +1

Query: 388 RQSRIVIIMRRHMLSYPTALDLMESITFLISEGATGKS*KGTTSGRLMPDK*ANV*FLVK 567
           R   +  +M  HML YPT    ME +  + S G   K   G     L+ D+   V  LV 
Sbjct: 49  RHRDLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKR-IGYLGLMLLLDERQEVLMLVT 107

Query: 568 GSITEDVGEVSVEII 612
            S+ +D+   +  I+
Sbjct: 108 NSLKQDLNHTNQYIV 122


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +1

Query: 388 RQSRIVIIMRRHMLSYPTALDLMESITFLISEGATGKS*KGTTSGRLMPDK*ANV*FLVK 567
           R   +  +M  HML YPT    ME +  + S G   K   G     L+ D+   V  LV 
Sbjct: 49  RHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKR-IGYLGLMLLLDERQEVLMLVT 107

Query: 568 GSITEDVGE-----VSVEII*LNNIWNVQTSR 648
            S+ +D+       V + +  L NI + + +R
Sbjct: 108 NSLKQDLNHSNQYVVGLALCALGNICSAEMAR 139


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +1

Query: 388 RQSRIVIIMRRHMLSYPTALDLMESITFLISEGATGKS*KGTTSGRLMPDK*ANV*FLVK 567
           R   +  +M  HML YPT    ME +  + S G   K   G     L+ D+   V  LV 
Sbjct: 49  RHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKR-IGYLGLMLLLDERQEVLMLVT 107

Query: 568 GSITEDVGE-----VSVEII*LNNIWNVQTSR 648
            S+ +D+       V + +  L NI + + +R
Sbjct: 108 NSLKQDLNHSNQYVVGLALCALGNICSAEMAR 139


>At4g18870.1 68417.m02783 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 291

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 350 DSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEI 219
           D G   F   + + R + K+ D   P++  P S LPF +K+ E+
Sbjct: 111 DQGMELFKAEKLFARLVKKVQDQLPPHNSYPTSKLPFPTKIYEM 154


>At4g29450.1 68417.m04204 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 863

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 459 KYHFSYLRG-GNWKELKGDNIWTPYARQIS*RLIFS*G 569
           ++   YL G G +++ + D IW+PY+  IS   I + G
Sbjct: 202 RWDIGYLNGTGRYQDDRFDRIWSPYSSNISWNSIITSG 239


>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 206 QLSRFIFNNSLISPFQSGFRPGHSTISALLKVTG 105
           +LS+ + NNS+  PF SG +  H     +LK+ G
Sbjct: 605 ELSKVVLNNSISRPFCSGCKM-HCIFPIILKIVG 637


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 293 IPDPSVPNHFRPISILPFLSKVLEICVHKQLSRFIF 186
           +P  S P+H  P  +LP LS VL I     L+ F++
Sbjct: 89  LPRSSKPHHTSPTLLLPALSAVLVIATVIGLALFLY 124


>At4g36120.1 68417.m05141 expressed protein
          Length = 981

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = -1

Query: 618  QLDDLNRHFSHILRDRSLN*KSNVSLFVWHKASRCCPLSALSSCP 484
            QL  L    +HIL+ RS   K     F  HKAS   P SAL   P
Sbjct: 886  QLQSLQPQSNHILKSRSPEKK-----FQQHKASEVTPNSALDDLP 925


>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein low similarity to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 343

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 284 PSVPNHFRPISILPFLSKVLEICV 213
           P +P  FRP  I PFLSK  +IC+
Sbjct: 8   PRIPLRFRPKPISPFLSKP-QICL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,395
Number of Sequences: 28952
Number of extensions: 294770
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)