Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          25   0.73 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   5.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.0  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 199 NWLSGTVEWPLPSPMTI 249
           N  SGT++W LP+  T+
Sbjct: 218 NQCSGTIDWALPNKRTV 234


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 534 PTIFPSPRPLIVRPASY*PSCCRGRSQSRCPHRGSS 427
           PT    P P   R  S  P  CR    SRC  R SS
Sbjct: 55  PTPGDVPTPSSPRSISEDPLNCRDLPNSRCNSRESS 90


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 7   QYPQHPYAAPAPGHGLQPTM 26


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 231 QRPLHCAAQPVPGDGLVATV 172
           Q P H  A P PG GL  T+
Sbjct: 51  QYPQHPYAAPAPGHGLQPTM 70


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
 Frame = -2

Query: 534 PTIFPSPRPLIVRPASY*PSCCRGRSQSRCPHRGSSVQSFLVT*LFGKFLVE**HLIQSP 355
           PTI  +PRP   RP S  PS    +     P  G  V     +       V      ++P
Sbjct: 402 PTISTTPRPEWARPPST-PSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVS---TTEAP 457

Query: 354 CHELISRPETCPEIDSLTTSKA*DVKDRFQVHEV--QYGHRRRQRPLHCAAQP 202
               +S P+   E+D     K  + K  F  HE+  +Y      +P   A +P
Sbjct: 458 PAPAVSNPQN--EVDGSVAPK--ECKQDFMPHELCDKYYRCVHGKPTEFACRP 506


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 199 NWLSGTVEWPLP 234
           N  SGT++W LP
Sbjct: 209 NQCSGTIDWALP 220


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 469 PWPIAKPLSSSRIICS 422
           P+P   PLS S+ +CS
Sbjct: 72  PYPPNHPLSGSKHLCS 87


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 549 LQLVIPTIFPSPRPLIV 499
           + LV+PT   SP PL+V
Sbjct: 184 IALVLPTQGASPLPLLV 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,654
Number of Sequences: 336
Number of extensions: 3031
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)