Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   1.8  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.4  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   5.5  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.3  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   9.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.7  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   9.7  

>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 526 FPFSSPIDCPTSILLTLLLPWPIAKPLSSSRIICSEFLSNL--VIW 395
           +PF   I     I+LTL+  W + KP ++   + +  L  L  VIW
Sbjct: 436 YPFPQLIGFVIGIILTLVQGWTVFKPFAAGDFVDAYILLPLFFVIW 481


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 562 VMSPLATSNSDNFPFSSPIDCPTSILLTLLLPWPIAKPLSSSRIICSEFLSNLVI 398
           ++S    S S + P ++ +   +SIL    +P     P +SS    S  LSN  I
Sbjct: 85  ILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTI 139


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +3

Query: 237  SYDHTGPRALGICL*RPKLYLWLS-YRFPDMFPDVKLVRDMETELDAIIQQGIFQI 401
            S D + P   G+      L  W S Y  PD  PD   +        AI+ Q  F++
Sbjct: 1049 SLDQSSPLFTGVLSSTAALPEWTSSYYLPDYPPDATAMESTRCNCKAIVYQFFFRV 1104


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 153 KVNGETVQSQRAHHPELAERHSGVAAAVSY 242
           K++ E+ Q Q  H PE     S +A+ VSY
Sbjct: 77  KLHPESKQRQLPHSPEHERSRSPIASVVSY 106


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 275 TDSKCTRSSMVIGDGSGHSTVPLSQFRVMGSLRLYCLTIHFQEGSTNER 129
           +D+   RS +++GDGS H TV      +   L      I+  +G T ER
Sbjct: 438 SDAPHRRSILIVGDGSLHLTVQEISATIRNGLTPIIFVIN-NKGYTIER 485


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 178 DCTVSPFTFRKVAQTNGSLLLMGAQQNT*RARSGNGTCCIISAKNLNPSVLHMK*SES 5
           +CT SPF  R +     S   +  QQ     +S + T    S K+ + S+  M  SES
Sbjct: 262 NCTASPFEHRPIPLKRASEDQIIPQQTNKFHKSKSSTALFKSKKDSSSSLNKMHKSES 319


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/70 (30%), Positives = 27/70 (38%)
 Frame = -1

Query: 523 PFSSPIDCPTSILLTLLLPWPIAKPLSSSRIICSEFLSNLVIWKIPC*MIASNSVSMSRT 344
           P S    CP   +    +P P +   S  RI C      LVI K    +I  N   +S  
Sbjct: 423 PESKRRKCPKKFVARPPVPHPTSL-YSQIRIGCPYLKPKLVISKSFGTLIVKNHNQLSLL 481

Query: 343 NFTSGNMSGN 314
             T  N+ GN
Sbjct: 482 KCTFSNLDGN 491


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 465 HGSKRVNKMLVGQSMGEEKGKLSELLVARGLITPQMLKKLQQE 593
           HGS  +  + +   +  EK  L+       L+ P+  KKL Q+
Sbjct: 182 HGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQD 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,888
Number of Sequences: 5004
Number of extensions: 51649
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)