Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0537
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504 52 5e-07
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 33 0.20
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106... 30 1.4
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 29 2.5
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 3.3
07_03_1087 - 23868787-23869325,23870052-23870181 28 5.7
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 28 5.7
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 28 7.6
08_02_1261 + 25689487-25689666,25690642-25690887,25691032-256911... 28 7.6
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 7.6
>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
Length = 725
Score = 51.6 bits (118), Expect = 5e-07
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVP-LPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQ 182
DS YFMC+ E K +A M++ + L L+ RY FC AP+N + P L+ QS+
Sbjct: 540 DSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSR 599
Query: 183 RAHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRF-PDMFPDVKLVRDME 359
R +A G+ + + T L +YLWLS+ F D FP V+ +M
Sbjct: 600 RV---SIA---MGMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMS 653
Query: 360 TELDAIIQQGI 392
+ ++ + +
Sbjct: 654 INIADLLAKSL 664
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 333 DVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGF-AIGHGSKRVNKMLVGQSM 509
++ LV++ ++ + +++ +L +SEQ+++DE + ++ G K K+++ M
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSLNEGLK--EKLII---M 851
Query: 510 GEEKGKLSELLVAR 551
EE KLSE++VA+
Sbjct: 852 AEESTKLSEIIVAK 865
>01_05_0723 +
24607800-24608357,24609616-24610158,24610281-24610697,
24610804-24611244
Length = 652
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 354 METELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKL- 530
M E ++ +GI++ + + EQ++ E + HG +R L G S+G L
Sbjct: 365 MFEETGVLVHRGIYEAAKGIY--EQLM-PEIAAHLAAHG-ERARLRLTGHSLGGSLALLV 420
Query: 531 SELLVARGLITPQML 575
S +LVARG++ P+ L
Sbjct: 421 SLMLVARGVVGPEAL 435
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 288 KLYLWLSYRFPDMFPDVKLVRDMET 362
+LY+WLS+R D +PD +L ++
Sbjct: 574 ELYVWLSFRLEDSYPDRELAASQKS 598
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 153 KVNGETVQSQRAHHPELAERHSGV 224
+++GET +S A H + E+HSG+
Sbjct: 320 EIDGETTESLAADHQQFCEKHSGL 343
>07_03_1087 - 23868787-23869325,23870052-23870181
Length = 222
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -2
Query: 594 VLAEVSSTSAAL*VPLQLVIPTIFPSPRPLIVRPASY*-PSCCRGRSQSRCPHRGSSVQS 418
+L E + L +P ++P P R L A P CC G+ RCP G V S
Sbjct: 137 LLEEALNLEHLLCIPKDKLLPCPAPEVRRLECAQAPLPQPQCCNGK---RCPEVGMQVDS 193
Query: 417 ---FLVT*LFGKF 388
++ T L G F
Sbjct: 194 PATYIKTRLLGHF 206
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 156 VNGETVQSQRAHHPELAERHSGVAAAVS 239
+NG V S+ HHP + RH G A ++
Sbjct: 191 LNGTFVNSRAVHHPNVGSRHWGEPAELA 218
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 656 HNLFPSVPILFRSVYLLVGGEFLLKF 579
+++F +P+LFR ++ GEF+ KF
Sbjct: 186 YSIFMDLPLLFRPKEMVKNGEFIYKF 211
>08_02_1261 +
25689487-25689666,25690642-25690887,25691032-25691128,
25691233-25691630,25692013-25692267
Length = 391
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 508 IDCPTSILLTLLLPWPIAKPLSSSRIICSE 419
IDCP LL LLP P A+ + RI+C E
Sbjct: 199 IDCPN--LLIRLLPAPSAEWSGTVRIVCKE 226
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 243 HRRRQRPLHCAAQP 202
HRR+QRPLH A +P
Sbjct: 65 HRRKQRPLHYACRP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,196
Number of Sequences: 37544
Number of extensions: 382971
Number of successful extensions: 1072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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