Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)              32   0.48 
SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   5.9  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   5.9  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  28   5.9  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   28   7.7  

>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
          Length = 479

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +3

Query: 39  FKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQR 185
           +++LAE+++ +PL +  +Y  C AP++       +  ++V+  T+   R
Sbjct: 237 YRYLAELVEGIPLTIWEQYSICQAPVSRNRTLSASVIVEVSVLTLPVSR 285



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +3

Query: 291 LYLWLSYRFPDMFPDVKLVRDMETELDAII 380
           L L+ SYRFP++F D + +R+M+  ++ II
Sbjct: 373 LLLYYSYRFPEVFTDQENMREMQQFVEKII 402


>SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = +3

Query: 339 KLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEE 518
           K ++D +  +   IQ  +  +++ ++NSE+ +RD+  G      SK+VN   V Q+  +E
Sbjct: 110 KEIKDSKKSISKEIQDSVKSVSKKIQNSEKSVRDDVHGV-----SKQVND--VSQTFHQE 162

Query: 519 KGKLSELL 542
             ++ + L
Sbjct: 163 FKEMHQKL 170


>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1400

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 509 GRGEGKIVGITSCKG---THNAADVEETSAR 592
           G+G+ K++    CKG   THN A V +  AR
Sbjct: 376 GKGKPKVIQCVYCKGKHSTHNCATVSDPKAR 406


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 509 GRGEGKIVGITSCKG---THNAADVEETSAR 592
           G+G+ K++    CKG   THN A V +  AR
Sbjct: 274 GKGKPKVIQCVYCKGKHSTHNCATVSDPKAR 304


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 509 GRGEGKIVGITSCKG---THNAADVEETSAR 592
           G+G+ K++    CKG   THN A V +  AR
Sbjct: 355 GKGKPKVIQCVYCKGKHSTHNCATVSDPKAR 385


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 339 KLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDE 443
           K+++D E  +  +IQ     I++ +R+ EQ +R+E
Sbjct: 227 KVIQDSEKSISKVIQDSEKSISKEIRDLEQSVREE 261


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 442  SSRIICSEFLSNLVIWKIPC*MIASNSVSMSRTNFTSGNMSGNR 311
            S  +I  E  SN+ I + PC ++    +++++T+ TS  +  +R
Sbjct: 1249 SGNLIKEEVTSNITITERPCNILTIGFINIAKTSVTSTRLQKSR 1292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,446
Number of Sequences: 59808
Number of extensions: 423365
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)