Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0537
(661 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-l... 131 2e-30
AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-l... 131 2e-30
AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent ... 131 2e-30
AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated gua... 31 4.8
AY152396-1|AAN73051.1| 1288|Homo sapiens synaptojanin 2A protein. 30 8.4
AL139330-4|CAI12983.1| 1496|Homo sapiens synaptojanin 2 protein. 30 8.4
AF318616-1|AAG46036.1| 1496|Homo sapiens synaptojanin 2 protein. 30 8.4
AF039945-1|AAD02178.1| 1443|Homo sapiens synaptojanin 2B protein. 30 8.4
AB002346-1|BAA20805.2| 1443|Homo sapiens KIAA0348 protein protein. 30 8.4
>BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-like 1
(S. cerevisiae) protein.
Length = 786
Score = 131 bits (317), Expect = 2e-30
Identities = 85/213 (39%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQR 185
D YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC++ L+ + +++
Sbjct: 543 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP 602
Query: 186 AHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMETE 365
L R+ + L LYLWLSYRF DMFPD L+RD++ E
Sbjct: 603 LTFAWL-RRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKE 661
Query: 366 LDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM 509
LD IIQ G+ IT+L++ SE GF G S+ R K L ++
Sbjct: 662 LDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKAT 721
Query: 510 ---GEEKGKLS--ELLVARGLITPQMLKKLQQE 593
+ G+LS LV +GL+TP MLK+L++E
Sbjct: 722 EPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/57 (49%), Positives = 34/57 (59%)
Frame = +1
Query: 118 ITSYRSFVLPS*K*MVRQYSRNEPITRNWLSGTVEWPLPSPMTILDLVHLESVFDVL 288
I + FV S RQYSRNEP+T WL ++WPL P I DL+ LE+V DVL
Sbjct: 579 INKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVL 635
>AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-like 1
(S. cerevisiae) protein.
Length = 786
Score = 131 bits (317), Expect = 2e-30
Identities = 85/213 (39%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQR 185
D YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC++ L+ + +++
Sbjct: 543 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP 602
Query: 186 AHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMETE 365
L R+ + L LYLWLSYRF DMFPD L+RD++ E
Sbjct: 603 LTFAWL-RRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKE 661
Query: 366 LDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM 509
LD IIQ G+ IT+L++ SE GF G S+ R K L ++
Sbjct: 662 LDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKAT 721
Query: 510 ---GEEKGKLS--ELLVARGLITPQMLKKLQQE 593
+ G+LS LV +GL+TP MLK+L++E
Sbjct: 722 EPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/57 (49%), Positives = 34/57 (59%)
Frame = +1
Query: 118 ITSYRSFVLPS*K*MVRQYSRNEPITRNWLSGTVEWPLPSPMTILDLVHLESVFDVL 288
I + FV S RQYSRNEP+T WL ++WPL P I DL+ LE+V DVL
Sbjct: 579 INKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVL 635
>AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent
mitochondrial RNA helicase protein.
Length = 786
Score = 131 bits (317), Expect = 2e-30
Identities = 85/213 (39%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQR 185
D YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC++ L+ + +++
Sbjct: 543 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP 602
Query: 186 AHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMETE 365
L R+ + L LYLWLSYRF DMFPD L+RD++ E
Sbjct: 603 LTFAWL-RRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKE 661
Query: 366 LDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM 509
LD IIQ G+ IT+L++ SE GF G S+ R K L ++
Sbjct: 662 LDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKAT 721
Query: 510 ---GEEKGKLS--ELLVARGLITPQMLKKLQQE 593
+ G+LS LV +GL+TP MLK+L++E
Sbjct: 722 EPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/57 (49%), Positives = 34/57 (59%)
Frame = +1
Query: 118 ITSYRSFVLPS*K*MVRQYSRNEPITRNWLSGTVEWPLPSPMTILDLVHLESVFDVL 288
I + FV S RQYSRNEP+T WL ++WPL P I DL+ LE+V DVL
Sbjct: 579 INKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVL 635
>AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated
guanylate kinase MAGI3 protein.
Length = 1150
Score = 30.7 bits (66), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 91 RARSGNGTCCIISAKNLNPS 32
R G GTCCI+S K NPS
Sbjct: 49 REEPGGGTCCIVSGKAPNPS 68
>AY152396-1|AAN73051.1| 1288|Homo sapiens synaptojanin 2A protein.
Length = 1288
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 QGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV--ARGL 557
+G ++ +L + M R S F G + + +LVG GEE +L+ L
Sbjct: 449 EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL 508
Query: 558 ITPQMLKKLQQELS 599
+TP++LK + + S
Sbjct: 509 VTPRILKAMTERQS 522
>AL139330-4|CAI12983.1| 1496|Homo sapiens synaptojanin 2 protein.
Length = 1496
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 QGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV--ARGL 557
+G ++ +L + M R S F G + + +LVG GEE +L+ L
Sbjct: 449 EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL 508
Query: 558 ITPQMLKKLQQELS 599
+TP++LK + + S
Sbjct: 509 VTPRILKAMTERQS 522
>AF318616-1|AAG46036.1| 1496|Homo sapiens synaptojanin 2 protein.
Length = 1496
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 QGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV--ARGL 557
+G ++ +L + M R S F G + + +LVG GEE +L+ L
Sbjct: 449 EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL 508
Query: 558 ITPQMLKKLQQELS 599
+TP++LK + + S
Sbjct: 509 VTPRILKAMTERQS 522
>AF039945-1|AAD02178.1| 1443|Homo sapiens synaptojanin 2B protein.
Length = 1443
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 QGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV--ARGL 557
+G ++ +L + M R S F G + + +LVG GEE +L+ L
Sbjct: 396 EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL 455
Query: 558 ITPQMLKKLQQELS 599
+TP++LK + + S
Sbjct: 456 VTPRILKAMTERQS 469
>AB002346-1|BAA20805.2| 1443|Homo sapiens KIAA0348 protein protein.
Length = 1443
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 QGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV--ARGL 557
+G ++ +L + M R S F G + + +LVG GEE +L+ L
Sbjct: 396 EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL 455
Query: 558 ITPQMLKKLQQELS 599
+TP++LK + + S
Sbjct: 456 VTPRILKAMTERQS 469
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,631,151
Number of Sequences: 237096
Number of extensions: 1960875
Number of successful extensions: 4793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -