Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p pro...   182   4e-46
AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA, ...   165   6e-41
X04695-1|CAA28400.1|  510|Drosophila melanogaster l(2) amd prote...    29   4.2  
AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA p...    29   4.2  

>AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p
           protein.
          Length = 499

 Score =  182 bits (443), Expect = 4e-46
 Identities = 97/197 (49%), Positives = 128/197 (64%)
 Frame = +3

Query: 3   DDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQ 182
           DDSLYFMCN E FKFLAEMIQHV LPLRARYVFCCAPIN K+PFVC+ FLKV  +  +++
Sbjct: 266 DDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNE 325

Query: 183 RAHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMET 362
                +  +++ G    +         L        LYLWLSYRF D+FP+   VRD + 
Sbjct: 326 PITF-DFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFMDLFPEAAYVRDAQK 384

Query: 363 ELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELL 542
           ELD IIQQG+FQITRLL+N+E     E S +AI    +R+  +   +     +G+L+E L
Sbjct: 385 ELDEIIQQGVFQITRLLKNTEASQDGETSNYAI----RRITHVKEPRLPSLSRGRLTERL 440

Query: 543 VARGLITPQMLKKLQQE 593
           +A+GL+TP ML +L++E
Sbjct: 441 LAQGLLTPGMLSELRKE 457



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +1

Query: 160 MVRQYSRNEPITRNWLSGTVEWPLPSPMTILDLVHLESVFDVL 288
           + RQYSRNEPIT +++     WP   P TILDLVHLE+VFDV+
Sbjct: 317 VARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 359


>AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA,
            isoform A protein.
          Length = 758

 Score =  165 bits (400), Expect = 6e-41
 Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 1/198 (0%)
 Frame = +3

Query: 3    DDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQ 182
            DDSLYFMCN E FKFLAEMIQHV LPLRARYVFCCAPIN K+PFVC+ FLKV  +  +++
Sbjct: 530  DDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNE 589

Query: 183  RAHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLS-YRFPDMFPDVKLVRDME 359
                 +  +++ G      +    P+ +   +    ++  +  YRF D+FP+   VRD +
Sbjct: 590  PITF-DFIKKNCG------WPFKLPKTILDLVHLEAVFDVMDLYRFMDLFPEAAYVRDAQ 642

Query: 360  TELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSEL 539
             ELD IIQQG+FQITRLL+N+E     E S +AI    +R+  +   +     +G+L+E 
Sbjct: 643  KELDEIIQQGVFQITRLLKNTEASQDGETSNYAI----RRITHVKEPRLPSLSRGRLTER 698

Query: 540  LVARGLITPQMLKKLQQE 593
            L+A+GL+TP ML +L++E
Sbjct: 699  LLAQGLLTPGMLSELRKE 716



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +1

Query: 160 MVRQYSRNEPITRNWLSGTVEWPLPSPMTILDLVHLESVFDVL 288
           + RQYSRNEPIT +++     WP   P TILDLVHLE+VFDV+
Sbjct: 581 VARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 623


>X04695-1|CAA28400.1|  510|Drosophila melanogaster l(2) amd protein
           protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 135 VCATFLKVNGETVQSQRAHHPELAERHSGVAAAVS-YDHTGPRALGICL*RPK 290
           V  TF  +  E +++  A H ELA++   +    S ++   PRALG+   RPK
Sbjct: 362 VWITFRTLEAEGLRNHVAKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPK 414


>AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   DSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 98
           D +  MCN + +    E + ++ +PLRA+Y+
Sbjct: 145 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYI 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,835,537
Number of Sequences: 53049
Number of extensions: 625197
Number of successful extensions: 1500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)