Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0537
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 32 0.41
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 32 0.41
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 32 0.41
Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL132948-34|CAD31836.1| 248|Caenorhabditis elegans Hypothetical... 29 3.9
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.9
U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily ass... 27 8.9
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical protein
C08F8.2b protein.
Length = 719
Score = 79.0 bits (186), Expect = 3e-15
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Frame = +3
Query: 15 YFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQRAHH 194
+F+C + LA +I +PLPL+ RY FC +P+N + A F+K+ Q +
Sbjct: 524 FFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFSTGQALTY 583
Query: 195 PELAERHSGVAAAVSYDHTGPRALGICL*RPKL---YLWLSYRFPDMFPDVKLVRDMETE 365
L + T L + ++ Y+WLS RFPDM PD VR+
Sbjct: 584 EWLIDMLEWPPKPA----TTLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKH 639
Query: 366 LDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV 545
LD++IQ+G+ LL S + +G + KR N + ++ + E L+
Sbjct: 640 LDSMIQEGVESFMSLL--SVGATESKAAGSSKSSEGKRENPSKSEREKPNKRSSILEALL 697
Query: 546 ARGLITPQMLKKLQQELS 599
R I+ L++L++EL+
Sbjct: 698 KRADISEDDLEQLREELN 715
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 160 MVRQYSRNEPITRNWLSGTVEWPLPSPMTIL-DLVHLESVFDVL 288
M R++S + +T WL +EWP P P T L +L LE +++L
Sbjct: 571 MARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNYEIL 613
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical protein
C08F8.2a protein.
Length = 721
Score = 79.0 bits (186), Expect = 3e-15
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Frame = +3
Query: 15 YFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQRAHH 194
+F+C + LA +I +PLPL+ RY FC +P+N + A F+K+ Q +
Sbjct: 526 FFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFSTGQALTY 585
Query: 195 PELAERHSGVAAAVSYDHTGPRALGICL*RPKL---YLWLSYRFPDMFPDVKLVRDMETE 365
L + T L + ++ Y+WLS RFPDM PD VR+
Sbjct: 586 EWLIDMLEWPPKPA----TTLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKH 641
Query: 366 LDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLV 545
LD++IQ+G+ LL S + +G + KR N + ++ + E L+
Sbjct: 642 LDSMIQEGVESFMSLL--SVGATESKAAGSSKSSEGKRENPSKSEREKPNKRSSILEALL 699
Query: 546 ARGLITPQMLKKLQQELS 599
R I+ L++L++EL+
Sbjct: 700 KRADISEDDLEQLREELN 717
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 160 MVRQYSRNEPITRNWLSGTVEWPLPSPMTIL-DLVHLESVFDVL 288
M R++S + +T WL +EWP P P T L +L LE +++L
Sbjct: 573 MARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNYEIL 615
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 156 VNGETVQSQRAHHPELAERHSGVAAAVSYDHTGPRALGIC 275
+NG+TV+ + ++A HSG V+ DH+G A+ +C
Sbjct: 649 INGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 156 VNGETVQSQRAHHPELAERHSGVAAAVSYDHTGPRALGIC 275
+NG+TV+ + ++A HSG V+ DH+G A+ +C
Sbjct: 649 INGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 156 VNGETVQSQRAHHPELAERHSGVAAAVSYDHTGPRALGIC 275
+NG+TV+ + ++A HSG V+ DH+G A+ +C
Sbjct: 649 INGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical
protein K09A9.5 protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.9
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFC----CAPINNKLPFVCATFLKVNGET- 170
D + MCN + + E + + +P RA+Y+ I N + + L V T
Sbjct: 159 DYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTP 218
Query: 171 ---VQSQRAHHPELAERHSGVAAAVSYDHTGPRALGICL-*RPKLYLWLSYRFPDMFPDV 338
+ +R E +ER SG +Y G A + + +Y W + +FP+ ++
Sbjct: 219 FFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDW-AIKFPERIDEL 277
Query: 339 KLVRDMETE 365
+ DM TE
Sbjct: 278 E---DMLTE 283
>AL132948-34|CAD31836.1| 248|Caenorhabditis elegans Hypothetical
protein Y39B6A.46 protein.
Length = 248
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/86 (23%), Positives = 30/86 (34%)
Frame = -3
Query: 329 KHVRKSIA*PQVKLRTSKTDSKCTRSSMVIGDGSGHSTVPLSQFRVMGSLRLYCLTIHFQ 150
KH+ + P + + + D T S F LYC T
Sbjct: 61 KHMVEDFLDPSAADFLGHLEPSTSSQDFIYYDDVALDTTTSSSFVTSQPRELYCFTCG-- 118
Query: 149 EGSTNER*LVIDGRAAEHVARPQRQR 72
+ N + L G+ AEH RP R++
Sbjct: 119 DAFNNRKGLYRHGKTAEHATRPPRRK 144
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/61 (18%), Positives = 31/61 (50%)
Frame = +3
Query: 369 DAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVA 548
D ++QG+ + + L+N++ I D + +GHG + + ++ ++ ++ + A
Sbjct: 612 DDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGLTTLGRKSEADAVYQKAAQMGVFMTA 671
Query: 549 R 551
+
Sbjct: 672 Q 672
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/61 (18%), Positives = 31/61 (50%)
Frame = +3
Query: 369 DAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVA 548
D ++QG+ + + L+N++ I D + +GHG + + ++ ++ ++ + A
Sbjct: 612 DDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGLTTLGRKSEADAVYQKAAQMGVFMTA 671
Query: 549 R 551
+
Sbjct: 672 Q 672
>U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily
assigned gene nameprotein 99 protein.
Length = 474
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 6 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 98
D + MCN + F E + + +P RA+Y+
Sbjct: 151 DYVSMMCNEQAFSLAIEKLLGIDVPPRAKYI 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,897
Number of Sequences: 27780
Number of extensions: 298876
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -