Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -1

Query: 568 CGVMSPLATSNSDNFPFSSPIDCPTSILLTLLLPW 464
           C +M        DN     P+ CP + ++ L + W
Sbjct: 198 CAIMLGPRLGRYDNGIDPLPLGCPVNAIMGLFVLW 232


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 210  AQPVPGDGLVATVLSHHSLSGR*HKRTVA 124
            A  VPG+ L+AT  +  S S   H+R ++
Sbjct: 1303 AVTVPGNNLIATNTTVSSGSSEDHRRPLS 1331


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = -1

Query: 529 NFPFSSPIDCPTSILLT-------LLLPWPIAKPLSSSRIICS 422
           N P S    C +++L T        + P+P   PLS S+ +CS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCS 111


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = -1

Query: 529 NFPFSSPIDCPTSILLT-------LLLPWPIAKPLSSSRIICS 422
           N P S    C +++L T        + P+P   PLS S+ +CS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,354
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)