Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0537
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri...    50   2e-06
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri...    36   0.018
At3g22790.1 68416.m02873 kinase interacting family protein simil...    30   1.2  

>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
            putative similar to mitochondrial RNA helicase
            [Arabidopsis thaliana] GI:5823579; contains Pfam profile
            PF00271: Helicase conserved C-terminal domain
          Length = 776

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
 Frame = +3

Query: 6    DSLYFMCNTEGFKFLAEMIQHVP-LPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQ 182
            D  YF+C  +  K +A M++ V  L L  R+ FC AP+N + P       +      Q+ 
Sbjct: 610  DGSYFLCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRAMHNLYRFASSYSQNM 669

Query: 183  RAHHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMET 362
              +      + S  + A   D      +        +YLWLS +F + FP V+ V  M T
Sbjct: 670  PVNVAMGIPKSSAKSDAQLLDLESRHQI------LSMYLWLSNQFEENFPFVEKVEAMAT 723

Query: 363  ELDAIIQQGIFQITRLLRNSEQMIR---DEDSGF 455
             +  ++ + + + +  + + E+ ++    ED G+
Sbjct: 724  NIAELLGESLSKASWKMESKEEKVKGQMKEDRGY 757


>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
           (SUV3) identical to mitochondrial RNA helicase
           [Arabidopsis thaliana] GI:5823579; contains Pfam profile
           PF00271: Helicase conserved C-terminal domain
          Length = 571

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 31/126 (24%), Positives = 55/126 (43%)
 Frame = +3

Query: 9   SLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKVNGETVQSQRA 188
           S YF+ N E    +A ++  +PL L+ +Y+F  +P++     +    L    +     +A
Sbjct: 425 SNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDVN-DEISGQGLAQFAQNF--SKA 481

Query: 189 HHPELAERHSGVAAAVSYDHTGPRALGICL*RPKLYLWLSYRFPDMFPDVKLVRDMETEL 368
               L E  +     V    T  + L        LY+WLS R  D FPD ++    ++  
Sbjct: 482 GIVRLREILAPDRVKVPKTPTELKELESIHKVLDLYVWLSLRLEDSFPDREVAASQKSIC 541

Query: 369 DAIIQQ 386
           + +I+Q
Sbjct: 542 NLLIEQ 547


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +3

Query: 336 VKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGE 515
           +KL  D  T   A   Q IFQ    L   + +I DE S +     S +  + L  QS  E
Sbjct: 403 LKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEE 462

Query: 516 EKGKLSELLVARGLITPQMLKKLQQE 593
           +K   SEL    G++     + L+ E
Sbjct: 463 QKVITSELQSRIGMLRDLETRNLKLE 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,376
Number of Sequences: 28952
Number of extensions: 284437
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)