Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0534
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2AB27 Cluster: Bitter taste receptor; n=1; Danio rerio...    33   5.9  
UniRef50_Q21IE6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A7TME0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, w...    33   7.8  

>UniRef50_Q2AB27 Cluster: Bitter taste receptor; n=1; Danio
           rerio|Rep: Bitter taste receptor - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 316

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 185 WMVSSLVAGLSFTSVYMFNCVLIFGLFDLLLRFNIRF 295
           WMV  L+ G++ TS+ MF+ V +F     L+ FN  F
Sbjct: 125 WMVEKLITGITVTSIVMFD-VSVFSQISDLMSFNATF 160


>UniRef50_Q21IE6 Cluster: Putative uncharacterized protein; n=1;
           Saccharophagus degradans 2-40|Rep: Putative
           uncharacterized protein - Saccharophagus degradans
           (strain 2-40 / ATCC 43961 / DSM 17024)
          Length = 378

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 189 IHLSNRPPFPQKEIYSSSEHS*SPVKQTTNIKNRWR 82
           I+ S +   P   IYS S  + +P+KQ TN  NRWR
Sbjct: 40  IYFSAKTVGPSSSIYSKSSETSAPIKQITN-DNRWR 74


>UniRef50_A7TME0 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 646

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 222 VKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQTTNIKNR 88
           +K+ PA K + I  S   P  + E+ SSSE S +P   T+++KNR
Sbjct: 395 IKVVPAIKSKRIE-SRHKPHERTEVLSSSESSSNPTDFTSHVKNR 438


>UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, whole
            genome shotgun sequence; n=7; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_111, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 3035

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = -2

Query: 352  LQFYGIFIYFMLFLYFMCLKSYIKS*Q*IE*TKNQNTIEHIDRSKTQARN*TRNHPP 182
            L FYGIFI F LF+YF  +    KS Q    T+ ++ I  ID    Q ++ T N  P
Sbjct: 2788 LLFYGIFIAFTLFIYFELISIESKSKQLPVQTRIESDIS-IDEVLKQTKSKTINFYP 2843


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,143,231
Number of Sequences: 1657284
Number of extensions: 12642205
Number of successful extensions: 23622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23601
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)