Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0534
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08)                      28   7.2  

>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 114 KQTTNIKNRWRA*NRSLCLECVYKKKHETS 25
           + T N+  RW + ++SLCL+  YK + ++S
Sbjct: 836 RTTGNLTTRWSSRSQSLCLQFWYKLRGDSS 865


>SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 476 FTYHYEVEKPKVPYKLVLHVEPYNIQKKKK 387
           + YH   +KPKVP++L   + P  I+K ++
Sbjct: 50  YFYHKRSKKPKVPHQLARILLPQKIKKSQR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,071,835
Number of Sequences: 59808
Number of extensions: 406001
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)