Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0534
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071071-1|AAL48693.1|   68|Drosophila melanogaster RE14453p pro...    32   0.75 
AF145655-1|AAD38630.1|  667|Drosophila melanogaster BcDNA.GH0914...    32   0.99 
AE013599-297|AAF59298.1|  667|Drosophila melanogaster CG4445-PA ...    32   0.99 
BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro...    31   1.7  
AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P...    31   1.7  
BT030441-1|ABO52861.1|  759|Drosophila melanogaster RE42355p pro...    29   9.3  
AF287292-1|AAG00999.1|  729|Drosophila melanogaster Disco-relate...    29   9.3  
AE014134-312|ABI31282.1| 2347|Drosophila melanogaster CG7337-PC,...    29   9.3  

>AY071071-1|AAL48693.1|   68|Drosophila melanogaster RE14453p
           protein.
          Length = 68

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 337 IFIYFMLFLYFMCLKSYIK 281
           I+I+FM FLY +CL  Y+K
Sbjct: 8   IYIFFMFFLYILCLSLYVK 26


>AF145655-1|AAD38630.1|  667|Drosophila melanogaster BcDNA.GH09147
           protein.
          Length = 667

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -1

Query: 371 FSQLMLIAILWNFHLFYAFFIFYVS*ILY*ILTINRIDQKSKH 243
           F QL  + +L+ F LF+AFF+F +S  LY + +I   D + +H
Sbjct: 5   FQQLKKLWLLYLFLLFFAFFMFAISINLY-VASIQGGDAEMRH 46


>AE013599-297|AAF59298.1|  667|Drosophila melanogaster CG4445-PA
           protein.
          Length = 667

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -1

Query: 371 FSQLMLIAILWNFHLFYAFFIFYVS*ILY*ILTINRIDQKSKH 243
           F QL  + +L+ F LF+AFF+F +S  LY + +I   D + +H
Sbjct: 5   FQQLKKLWLLYLFLLFFAFFMFAISINLY-VASIQGGDAEMRH 46


>BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p protein.
          Length = 1312

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 267  SNRPKIKTQLNI*TEVKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQT 106
            +N       +NI   V+L     LE   L  R P P+ EI    EH   P  +T
Sbjct: 959  NNNNNNNNNININNSVRLESDNGLEASELEEREPEPETEIEPEHEHEHEPEPET 1012


>AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA
            protein.
          Length = 1311

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 267  SNRPKIKTQLNI*TEVKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQT 106
            +N       +NI   V+L     LE   L  R P P+ EI    EH   P  +T
Sbjct: 958  NNNNNNNNNININNSVRLESDNGLEASELEEREPEPETEIEPEHEHEHEPEPET 1011


>BT030441-1|ABO52861.1|  759|Drosophila melanogaster RE42355p
           protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 270 KSNRPKIKTQLNI*TEVKLRPATKLETIHLSNRPP 166
           + NRPKI  + N  +++K  P+ K E       PP
Sbjct: 181 QKNRPKISVRFNTVSQIKYTPSAKRERQAREEEPP 215


>AF287292-1|AAG00999.1|  729|Drosophila melanogaster Disco-related
           protein protein.
          Length = 729

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = -3

Query: 267 SNRPKIKTQLNI*TEVKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQT 106
           +N       +NI   V+      LE   L  R P P+ EI    EH   P  +T
Sbjct: 376 NNNNNNNNNININNSVRRESDNGLEASELEEREPEPETEIEPEHEHEHEPEPET 429


>AE014134-312|ABI31282.1| 2347|Drosophila melanogaster CG7337-PC,
            isoform C protein.
          Length = 2347

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 270  KSNRPKIKTQLNI*TEVKLRPATKLETIHLSNRPP 166
            + NRPKI  + N  +++K  P+ K E       PP
Sbjct: 1769 QKNRPKISVRFNTVSQIKYTPSAKRERQAREEEPP 1803


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,258,805
Number of Sequences: 53049
Number of extensions: 595309
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)