Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0534
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 713 IPEPNIQHTTNAYRYTLLRRLSTSNLYH*CKQNLRYS 603
           IPEP  Q   N ++Y  +   +  N+Y    +N++Y+
Sbjct: 652 IPEP--QDIENIFKYGYVSHANQRNMYKLDLKNMKYT 686


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 713 SEMLIWRIDLSVK 751
           ++M+IW +D S+K
Sbjct: 18  NQMMIWALDCSIK 30


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 96  LCLLFVLRGITSVQKKNKSP 155
           +CL    +GITSV  +  SP
Sbjct: 9   VCLGIACQGITSVTVRENSP 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,680
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)