Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0533
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 76 2e-14
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 73 2e-13
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 66 2e-11
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 66 2e-11
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 64 8e-11
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 62 3e-10
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 62 5e-10
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 45 5e-05
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 37 0.013
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.65
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 1.5
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 28 8.0
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 28 8.0
SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_54295| Best HMM Match : RVP (HMM E-Value=0.037) 28 8.0
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 8.0
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Frame = +2
Query: 203 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 379
D DKFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVD 60
Query: 380 AESVESRLSSDGVLSVIAPRKVPPAVEGERKIP 478
S+ +R++ DG+L V A +K PPA E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 203 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCT 379
D KF + LDV F PEE+ VK + V + E ++HG+ + RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVD 153
Query: 380 AESVESRLSSDGVLSVIAPRK 442
+++ RL DGVL + A ++
Sbjct: 154 MDTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +2
Query: 182 LGSSIKSDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
L ++ + + DK ++ LDV+++ PEEIS+K G I ++GKH+ + +HGY + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSY 87
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVE 460
LP+G +V SR++ DG+L + A + P E
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEPQETE 121
Score = 28.3 bits (60), Expect(2) = 0.066
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 350 RRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
R + LP+ +S+ SRL DG L + A R + P ER++ I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPH-ERQVNI 203
Score = 25.4 bits (53), Expect(2) = 0.066
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 161 LAAAARDLGSSIKSDKDKFQVNLDVQHFAPE 253
+ A+ G K D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/92 (34%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERK 472
A +V++R+S+ G L + A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = +2
Query: 179 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
LP +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/92 (34%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERK 472
A +V++R+S+ G L + A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = +2
Query: 179 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
LP +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 64.5 bits (150), Expect = 8e-11
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERK 472
A +V++R+S+ G L + A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +2
Query: 209 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAE 385
D+ ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 386 SVESRLSSDGVLSVIAPRKVPPAVEGERK 472
+V++R+S+ G L + A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = +2
Query: 179 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 379
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
LP +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = +2
Query: 179 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
LP +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 64.5 bits (150), Expect = 8e-11
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERK 472
A +V++R+S+ G L + A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = +2
Query: 179 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 358
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 359 ALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
LP +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +2
Query: 227 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 406
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPEG E+V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 407 SDGVLSVIAPRKVPPAVEGE 466
+ G L + A RK P E E
Sbjct: 71 NHGHLHIEA-RKALPKPEAE 89
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/95 (31%), Positives = 51/95 (53%)
Frame = +2
Query: 197 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
K+ +DKF + +DV F PE I V+ ++V HE + + H Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREV 150
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
+S+ +RL +G L A + V PA+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
++++K ++ LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPEG
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61
Query: 377 TAESVESRLSSDGVLSVIAPRKVPPAVEGERK 472
A +V++R+S+ G L + A K P +G +K
Sbjct: 62 EASNVKTRISNHGQLHIEA-MKALPEPDGAKK 92
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/99 (30%), Positives = 53/99 (53%)
Frame = +2
Query: 185 GSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYAL 364
G+ +S DKF + +DV+ F PE I V+ ++V HE + + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 365 PEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 481
P +S+ +RL +G L A ++ PA+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 170 AARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQF 346
A ++ S+ D KF + LDV F PEE+ VK + V + E ++HG+ +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 70
Query: 347 TRRYALPE 370
R + LP+
Sbjct: 71 NRHFVLPQ 78
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/83 (22%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 197 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEG 373
++DK+ ++ ++V+ FA +++S++ ++++G+ +K D G+ RQF R P+
Sbjct: 94 QNDKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKS 151
Query: 374 CTAESVESRLSSDGVLSVIAPRK 442
+S+++ L +L + A ++
Sbjct: 152 TDMKSIKATLKYGDILEIEAQKE 174
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 299 KHEEKKDQHGYISRQFTRRYAL 364
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 530 RRWIGPSPPCARVRFGRSESCVHPPL--LAAPSWVRLQTTHHLKTAG 396
+ W P P V FG + C+H P+ L A W+ QTT KT G
Sbjct: 134 KSWSQPFP----VNFGVRQGCIHSPILFLVAIDWIMRQTTSD-KTRG 175
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 263 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 370
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 431 APRKVPPAVEGERKIPIAQTGP 496
+PR V P V ER+I ++Q+GP
Sbjct: 1384 SPRSVKPVVRSERRIKLSQSGP 1405
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 196 DTGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQ 80
D A V + S V+ FS H G+ CST + ++P+
Sbjct: 154 DVLAAVKTPVSPVSSNGTAFSEHGGSPCSTPTVSSAEPR 192
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 296 GKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKV--PPAVEGER 469
G ++ KK+ GY+ R+ +R + P G ++ + + ++ + + + PA G R
Sbjct: 202 GDYDSKKNSKGYLVRENSRFFVPPNGLNSDGEINESDYEEIVKKMHKKLIGESPARAGNR 261
Query: 470 KIPIAQTGP 496
+ A++ P
Sbjct: 262 FLRAAESIP 270
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 371 GCTAESVESRLSSDGVLSVIAPRKVPPA 454
G + +S+ES++ SDG ++P K PA
Sbjct: 531 GSSPQSLESQVLSDGCTKTMSPNKTSPA 558
>SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 488 FGRSESCVHPPLLAAPSWVRLQTTHHLKTAGT 393
F R+ V+PP LA P W+ + H T GT
Sbjct: 31 FTRTIGKVYPPTLANPDWIHYE-EHFKTTTGT 61
>SB_54295| Best HMM Match : RVP (HMM E-Value=0.037)
Length = 239
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 443 VPPAVEGERKIPIAQTGPVRKEVKD-QSNG 529
V P + RK+PI+ GPV++++ + + NG
Sbjct: 156 VTPVIHPPRKLPISPLGPVKEKLSEMEQNG 185
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 27.9 bits (59), Expect = 8.0
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +2
Query: 197 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 376
KSD FQ+ Q P ++ K + E K+EE D+HG I R+ T+
Sbjct: 1162 KSDLSTFQITPISQ--IPSSLTEK-----LQPETKYEEYVDEHGQIIRRTTKVKHTAVKQ 1214
Query: 377 TAESVESRLSSDGVLSVIA-PRKVPPAVEGERKIPIAQTGPVR 502
+V ++ DGV + A + PP VE ++ + VR
Sbjct: 1215 ERTTVTKTVTRDGVTTREANVIESPPEVESSTQVYRDEESSVR 1257
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -1
Query: 445 HLPGCDYRQHTI*RQPGLHRFSRTALRQSVATSELTRYVTMLIFLLLVFAFN 290
H YR H + R+P H +R + + + +T L++ ++AFN
Sbjct: 204 HFERVPYRNHQVLREPARH-VTRFIALSYIGNPQKKKILTELLYFQYMYAFN 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,145
Number of Sequences: 59808
Number of extensions: 513539
Number of successful extensions: 1509
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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