Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0531
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    27   0.16 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.4  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 418 GSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPA 293
           G+   R M   + +GY   +Y AN PP  K   + LS   P+
Sbjct: 72  GAYPFRPMHQNSYTGYHLGSYAANCPPSPKDDEKCLSLERPS 113


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 486 HHELGILVNQQEPLSLQGNN 427
           H EL  +VN+  PLSL  ++
Sbjct: 324 HEELSAMVNRCHPLSLSSDH 343


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -3

Query: 418 GSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPALTSS 281
           G   +    PA  S     +      P   PP  T S+G+PA  +S
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVAS 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,811
Number of Sequences: 336
Number of extensions: 3901
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)