Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0531
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...   152   6e-38
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    32   0.097
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    30   0.39 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   3.6  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    27   3.6  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   6.4  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   6.4  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score =  152 bits (368), Expect = 6e-38
 Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 8/221 (3%)
 Frame = +3

Query: 6   NPVIIAAQARHTASLIFLHGLGDTGHGW---ASTIAGIRGPHVKVICPTASTMPVTLNNG 176
           N VII     HTA++IFLHGLGD+G GW   A+T +  +  H+K I P A ++PVT+NNG
Sbjct: 6   NSVIINPSVAHTATVIFLHGLGDSGQGWSFMANTWSNFK--HIKWIFPNAPSIPVTVNNG 63

Query: 177 FRMPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXX 356
            +MP+W+D+ +      EDE GI R+   +H LI  E+  G+P+D++L+GGFSQG     
Sbjct: 64  MKMPAWYDIYSFADMKREDENGILRSAGQLHELIDAELALGIPSDRILIGGFSQGCMVSL 123

Query: 357 XXXXTYPERLAGVMSLSCWLPRHGYFPGGL-KAPVDLPIFQAHGDKDPVVSFKWGQMTAS 533
               TYP+RLAG+M  S +LP    FP  L +   ++PI   +  +DP+V      ++++
Sbjct: 124 YAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEIPILLTYMTEDPIVP---SVLSSA 180

Query: 534 CLKTFMKNVKFS----TYQGLAHSSSIAELKDMQEFIEKTL 644
             K  + N++       ++G AHS S      M +F +  +
Sbjct: 181 SAKYLINNLQLKCLDRPFEGDAHSLSSESFMAMYKFTQTVI 221


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 31.9 bits (69), Expect = 0.097
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +3

Query: 48  LIFLHGLGDTGHGWASTIAGIRGPHVKVICPTAS-TMPVTLNNGFRMPSWFDLRTLDATA 224
           +I +HGLGD+   +A+    +  P+   I       +P+   N      W +    D   
Sbjct: 27  VILMHGLGDSHKSFANMAKNVPLPNTSYISLRGPYRLPLDFENPGGNWMWGEDVHFDQNG 86

Query: 225 P-EDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQG 341
             + E    ++  ++  LI + +  G+ + ++   GF QG
Sbjct: 87  ELQSEADFSKSFTMISNLIGNLLSYGILSSRIFFFGFGQG 126


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 589 CASPWYVENLTFFINVLRHD 530
           C SPW  E LT  IN+LR D
Sbjct: 165 CLSPWGTERLTATINILRSD 184


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 490 RTQLYLSNGDK*RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 621
           RT LYL +    R+H+   L + ++   +KD  +AH +    +C
Sbjct: 530 RTTLYLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGSC 573


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 126 KVICPTASTMPVTLNNGFRMPSW--FDLRTLDATAPEDEE 239
           +VIC +  T PV L+   R  SW  FD + L     E+E+
Sbjct: 188 RVICASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEED 227


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 513 WGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 617
           WGQ   + L TF++   F  Y       +++ELKD
Sbjct: 91  WGQFNRAHLPTFLRTPGFKLY-AWVFGCNLSELKD 124


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +3

Query: 165 LNNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGG 344
           + N  R P  FD++    TA E  E  ER       L    +  G+  +K++L G S GG
Sbjct: 132 MGNSSRPP--FDIK--GQTASEKVEETERF--FTESLETWRIGHGI--EKMILVGHSMGG 183

Query: 345 XXXXXXXXTYPERLAGVMSLS 407
                    YPER+  ++ +S
Sbjct: 184 YLSAVYAMQYPERVEKLLLVS 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,724
Number of Sequences: 5004
Number of extensions: 65517
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)