Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0531
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 113 1e-25
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 112 3e-25
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 107 7e-24
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 100 2e-21
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 92 4e-19
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 74 1e-13
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 63 3e-10
01_05_0331 - 21057957-21058205,21059213-21059791 33 0.31
08_02_1422 - 26971803-26971900,26974083-26975061 32 0.54
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 31 0.71
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597 31 0.71
05_04_0076 - 17697893-17697922,17698312-17698707 30 2.2
02_01_0144 - 1038547-1039650 29 5.0
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 28 8.8
08_01_0074 + 530207-532603 28 8.8
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 28 8.8
01_07_0275 + 42434082-42435152 28 8.8
01_01_0939 - 7404209-7404490,7405057-7405368,7405470-7405609,740... 28 8.8
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 113 bits (272), Expect = 1e-25
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Frame = +3
Query: 3 PNPVIIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVI---CPTASTMPVTLNN 173
P P+ AA AR+ + +++LHGLGD+G P ++ P+A PV+ N+
Sbjct: 40 PAPMAAAA-ARNRSFVLWLHGLGDSGPANEPIRNFFSAPEFRLTKWAFPSAPNSPVSCNH 98
Query: 174 GFRMPSWFDLRTLDATA--PEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGG- 344
G MPSWFD+ L ++ P+D+ G+ +A + VH +I EV G+P + + + GFSQGG
Sbjct: 99 GAVMPSWFDIHELPMSSGSPQDDSGVLKAVENVHAMIDKEVADGIPPENIFVCGFSQGGR 158
Query: 345 ------XXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLKAPV-DLPIFQAHGDKDPVV 503
YP+ L G S WLP + PI +HG D VV
Sbjct: 159 TSALHCALTLASVLLYPKTLGGGAVFSGWLPFGSSVTERISPEARKTPILWSHGIADNVV 218
Query: 504 SFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLPASK 656
F+ GQ L+ + +F Y GL HS S EL ++ +I+ L AS+
Sbjct: 219 LFEAGQAGPPFLQNAGFSCEFKAYPGLGHSISKEELYSLESWIKNHLKASQ 269
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 112 bits (269), Expect = 3e-25
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 20/233 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + H A++++LHGLGD G W+ + + P++K ICPTA T PV + GF +W
Sbjct: 25 VVRPKGAHKATIVWLHGLGDNGASWSQLLETLPLPNIKWICPTAPTRPVAVFGGFPSTAW 84
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQG---------- 341
FD+ L AP+D EG++ + V L++ E PAD K+ +GGFS G
Sbjct: 85 FDVADLSEDAPDDVEGLDASAAHVANLLSTE-----PADIKLGVGGFSMGAATALYSATC 139
Query: 342 -GXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVD-------LPIFQAHGDKDP 497
YP L+ + LS WLP +++ + +P+ HG D
Sbjct: 140 YAHGKYGNGNPYPVNLSVSVGLSGWLPCARSLKNKIESSQEAAQKASSIPLLLCHGKADD 199
Query: 498 VVSFKWGQMTASCLKTF-MKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLPAS 653
VV +K G+ +A LKT NV F +Y L H + E+ ++ +++ L S
Sbjct: 200 VVLYKHGEKSADALKTTGFSNVVFKSYNRLGHYTVPEEMDEVCKWLTANLGVS 252
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 107 bits (258), Expect = 7e-24
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + RH A++++LHGLGD G W+ + + P++K ICPTA T PV GF +W
Sbjct: 57 VVRPKGRHQATIVWLHGLGDNGASWSQLLDSLPLPNIKWICPTAPTRPVAAFGGFPCTAW 116
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQG---------- 341
FD+ +D EG++ + V L++ E P+D K+ +GGFS G
Sbjct: 117 FDVEDTSVDGRDDIEGLDASAAHVANLLSSE-----PSDVKLGIGGFSMGAAAALHSAAC 171
Query: 342 -GXXXXXXXXTYPERLAGVMSLSCWLP-------RHGYFPGGLKAPVDLPIFQAHGDKDP 497
YP L+ V+ LS WLP + L+ LPI +HG D
Sbjct: 172 YAHGRFTNGVAYPVTLSAVIGLSGWLPCSRTLKSKMDSSQTALRRAGALPILLSHGRADE 231
Query: 498 VVSFKWGQMTASCLK-TFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
VV+++ G+ +A L+ + + + F Y GL H + E+ D+ +++ L
Sbjct: 232 VVTYRNGEKSADFLRGSGFQYLNFKPYNGLGHYTIPEEMDDVCKWLSSRL 281
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 99.5 bits (237), Expect = 2e-21
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + RH A++++LHGLGD G W+ + + P++K ICPTA+T PVT GF +W
Sbjct: 24 VVRPKGRHQATIVWLHGLGDNGASWSQLLDSLSLPNIKWICPTAATQPVTAFGGFPCTAW 83
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQG----------- 341
FD+ +D EG++ + + L++ E P K+ +GGFS G
Sbjct: 84 FDVEDTSVDGRDDIEGLDASAAHIANLLSSE----PPDVKLGIGGFSMGAAASLYSAACY 139
Query: 342 GXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLKA-------PVDLPIFQAHGDKDPV 500
YP L+ V+SLS WLP G +++ LPI +HG D V
Sbjct: 140 AHGKFASGIPYPITLSAVISLSGWLPCSRTLRGKMESSHIAARRAASLPILLSHGRADEV 199
Query: 501 VSFK 512
VS++
Sbjct: 200 VSYR 203
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 92.3 bits (219), Expect = 4e-19
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
I+ + RH A++++LHGLGD G W+ + + P++K ICPTA+T PVT GF +W
Sbjct: 24 IVRPKGRHQATIVWLHGLGDNGASWSQLLDSLSLPNIKWICPTAATRPVTAFGGFPCTAW 83
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQG----------- 341
FD+ + +D EG++ + + L++ E P K+ +GGFS G
Sbjct: 84 FDVEDISVDGRDDIEGLDASAAHIANLLSSE----PPDVKLGIGGFSMGAAAALHSAACY 139
Query: 342 GXXXXXXXXTYPERLAGVMSLSCWLP 419
YP L+ V+SLS WLP
Sbjct: 140 AHGKFANSMPYPITLSAVISLSGWLP 165
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 74.1 bits (174), Expect = 1e-13
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Frame = +3
Query: 48 LIFLHGLGDTGHGWASTIAG-IRGPH---VKVICPTASTMPVTLNNGFRMPSWFDLRTLD 215
+++LHG G TG + +A P V+ PTA T + G + +WF + +
Sbjct: 10 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 69
Query: 216 ATA--PEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLA 389
TA DE+ + +A + VH ++ EV AG + + G SQGG YP L
Sbjct: 70 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLG 129
Query: 390 GVMSLSCWLPRHGYFPGGLKAPV-DLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKF 566
G + S LP F + + P+ HG D VV F+ G + L+ + +F
Sbjct: 130 GCVVFSGSLPLSKTFAESIPSEARKTPVLWFHGMADGVVLFEAGHAGCAFLQEIGMHCEF 189
Query: 567 S-TYQGLAHSSSIAELKDMQEFIEKTL 644
Y L H+ EL+ +++I+ L
Sbjct: 190 KVAYPALGHTLVDEELQYFRQWIKDRL 216
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 62.9 bits (146), Expect = 3e-10
Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Frame = +3
Query: 231 DEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSC 410
DEE + RA VH +I E+ AG V + G SQGG +P+ L G S
Sbjct: 428 DEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTLGGCAVFSG 487
Query: 411 WLPRHGYF-------PGGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFS 569
+LP + F L+ + P+ HG ++ K G+ L+ + +F
Sbjct: 488 FLPFNSSFAVRVTAQAKKLQCGLQTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCEFK 547
Query: 570 TYQGLAHSSSIAELKDMQEFIEKTLPAS 653
Y L HS EL Q ++EK L S
Sbjct: 548 VYDRLGHSLEYYELDYCQRWVEKILHRS 575
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 276 IADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLKAP 455
+ D V+A ++ +L G S GG T+P+++A + ++ +LP P P
Sbjct: 70 LLDAVRALPDGERAVLVGHSFGGMSVALAAETFPDKVAAAVFVAAFLPDCANPP---SHP 126
Query: 456 VDLPIFQAHGDK 491
+D I H DK
Sbjct: 127 IDTVINSYHDDK 138
>08_02_1422 - 26971803-26971900,26974083-26975061
Length = 358
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 57 LHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNG 176
LHG GD G W+S++ + PHV + P + N G
Sbjct: 112 LHGYGDNGESWSSSLEQVPLPHVYPL-PVIEEFGIVPNGG 150
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 297 GVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHG 428
G ++V+L G SQGG +PER+A V+ L+ +P G
Sbjct: 90 GDDEERVVLVGHSQGGFSVALAAERFPERVAAVVFLTAAMPPVG 133
>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
Length = 263
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 303 PADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRH 425
P +KV+L G S GG +P+++A + L ++P H
Sbjct: 75 PGEKVVLVGHSLGGINVALAAELFPDKIAAAVFLCAFMPDH 115
>05_04_0076 - 17697893-17697922,17698312-17698707
Length = 141
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 309 DKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLPRHG 428
++V+L G S GG +PERLA V+ L+ +P G
Sbjct: 84 ERVVLVGHSHGGFSVALAAEWFPERLAAVVFLTASMPPVG 123
>02_01_0144 - 1038547-1039650
Length = 367
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -3
Query: 451 AFKPPGK*PCRGSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPALTSSA 278
A +PP P R S TPA S + A A PP EK P +T S A+ ++A
Sbjct: 26 ASQPPA--PPRPSNPRHRKTPAKASKTPAPATAAAPPPVEKRPIKTASDLAAAIRAAA 81
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -3
Query: 685 IFSSNKWYIYFDAGRVFSINSCMS--LSSAMDELCASPWY--VENLTFF-INVLRHDAVI 521
I+ S +W+++ A + ++ + M +S D + A+ W+ + L I+VL HD +
Sbjct: 290 IWGSGEWWMFLSA-QSMAVGTIMVRWVSKYSDPIMATGWHMIIGGLPLLVISVLNHDPAL 348
Query: 520 CPHLKDTT 497
HL++ T
Sbjct: 349 NGHLQELT 356
>08_01_0074 + 530207-532603
Length = 798
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 231 DEEGIERATDLVHGLIADEVKAGVPADKV 317
DE ++A L+H ++AD+ + G P D V
Sbjct: 179 DENRSQQALHLLHTMMADDTRGGCPPDVV 207
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 210 LDATAPEDEEGIERATDLVHGLIADEVKAGV 302
L++ P DEEG+E A +L+H + + V+ G+
Sbjct: 495 LESGKPVDEEGVEDAFELLHE-VNERVRTGI 524
>01_07_0275 + 42434082-42435152
Length = 356
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 120 HVKVICPTASTMPVTLNNGFRMPSWFD 200
H+KV CP +T T+N+ R P+ FD
Sbjct: 235 HLKVTCPVLNTNDTTVND-IRTPNTFD 260
>01_01_0939 -
7404209-7404490,7405057-7405368,7405470-7405609,
7406226-7406289,7406378-7406616,7406957-7406983,
7407590-7407749
Length = 407
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 290 NFISNQPMDEISGSLNTFFIFRSC-SVQRS*IKPRGHTETVVERHGHSRSR 141
N + P ++ S + N SC ++ S KP H E++V RH H R R
Sbjct: 279 NSANTAPGEKYSLAYNQTAFLLSCRTMMYSLRKPPKHFESLVARHFHERER 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,380,392
Number of Sequences: 37544
Number of extensions: 446822
Number of successful extensions: 1176
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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