Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0531
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18) 83 2e-16
SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14) 31 0.96
SB_53275| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 29 2.9
SB_40427| Best HMM Match : rve (HMM E-Value=2.7e-05) 29 2.9
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 29 2.9
SB_13117| Best HMM Match : rve (HMM E-Value=0.00037) 29 2.9
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 2.9
SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16) 29 2.9
SB_24099| Best HMM Match : rve (HMM E-Value=5.3e-16) 29 2.9
SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 2.9
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 2.9
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 29 3.9
SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16) 29 3.9
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_34864| Best HMM Match : rve (HMM E-Value=2.9e-16) 29 5.1
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 29 5.1
SB_4516| Best HMM Match : rve (HMM E-Value=6.5) 29 5.1
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 29 5.1
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 6.8
SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15) 28 9.0
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 9.0
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 9.0
>SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)
Length = 244
Score = 83.4 bits (197), Expect = 2e-16
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
Frame = +3
Query: 120 HVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAG 299
H++V+ P A + ++ R P WF+ + PE + IER+ LV LI D V +G
Sbjct: 50 HIRVVFPQAPEIISKVDRDERRPVWFNRKDYSPAFPEQIDSIERSCSLVRQLINDLVTSG 109
Query: 300 VPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWL-PRHGYFPGGLKAPVDL---- 464
+ D+++LGG G Y +AGV LS L P + L V
Sbjct: 110 IRKDRIVLGGCDMGAQIAMHVAYRYLPDVAGVFGLSTHLGPLSHVYKVLLHKRVTQSDFE 169
Query: 465 --PIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEK 638
P+ HG D V+ KW TA + Y G H S+ ++ ++E+I K
Sbjct: 170 WPPLLLCHGHDDKRVNLKWAAHTAEYFMDLNVETELQVYYGQNHELSVHQVNHLKEWIIK 229
Query: 639 TLP 647
TLP
Sbjct: 230 TLP 232
>SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14)
Length = 691
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 476 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 529
Query: 648 ASK*MY--HLLLEK 683
K + H LL K
Sbjct: 530 TVKDLLQKHALLNK 543
>SB_53275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 150 TMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIER 251
T+P +N + PS L+T TAP DE+ +++
Sbjct: 156 TLPELMNRTYNRPSIDTLKTSQVTAPVDEQSLKK 189
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 201 LRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 338
L TL + P E+ I+ A V L KAG+ ADK+ F Q
Sbjct: 1187 LETLGSVIPPHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 1232
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 469 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 522
Query: 648 ASK 656
K
Sbjct: 523 TVK 525
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 577 WYVENLTFFINVLRHDAVICPHLKDTTGSLSP*AWN 470
W V F+ +R D PH+ TT L AWN
Sbjct: 2127 WMVRPRVLFVRFVRRDLKHTPHISTTTKLLKYRAWN 2162
>SB_40427| Best HMM Match : rve (HMM E-Value=2.7e-05)
Length = 193
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 123 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 176
Query: 648 ASK 656
K
Sbjct: 177 TVK 179
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 795 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 848
Query: 648 ASK 656
K
Sbjct: 849 TVK 851
>SB_13117| Best HMM Match : rve (HMM E-Value=0.00037)
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 235 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 288
Query: 648 ASK 656
K
Sbjct: 289 TVK 291
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 978 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1031
Query: 648 ASK 656
K
Sbjct: 1032 TVK 1034
>SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 310 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 363
Query: 648 ASK 656
K
Sbjct: 364 TVK 366
>SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 354 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 407
Query: 648 ASK 656
K
Sbjct: 408 TVK 410
>SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16)
Length = 550
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 352 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 405
Query: 648 ASK 656
K
Sbjct: 406 TVK 408
>SB_24099| Best HMM Match : rve (HMM E-Value=5.3e-16)
Length = 307
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 76 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 129
Query: 648 ASK 656
K
Sbjct: 130 TVK 132
>SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 921
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 661 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 714
Query: 648 ASK 656
K
Sbjct: 715 TVK 717
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 1098 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1151
Query: 648 ASK 656
K
Sbjct: 1152 TVK 1154
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 201 LRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 338
L TL + P E+ I+ A V L KAG+ ADK+ F Q
Sbjct: 181 LETLGSVIPLHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 226
>SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 533 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTNPYYKEANGFIERNVQ 586
Query: 648 ASK 656
K
Sbjct: 587 TVK 589
>SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16)
Length = 413
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 182 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTNPYYKEANGFIERNVQ 235
Query: 648 ASK 656
K
Sbjct: 236 TVK 238
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 175
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 46 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 102
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 175
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 510 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 566
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 201 LRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 338
L TL + P E+ I+ A V L KAG+ ADK+ F Q
Sbjct: 723 LETLGSVIPLHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 768
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 1026 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVR 1079
Query: 648 ASK 656
K
Sbjct: 1080 TVK 1082
>SB_34864| Best HMM Match : rve (HMM E-Value=2.9e-16)
Length = 304
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 123 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 176
Query: 648 ASK 656
K
Sbjct: 177 TVK 179
>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 664 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 717
Query: 648 ASK 656
K
Sbjct: 718 TVK 720
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 526 RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 621
RHH+S ++++ QHT P PNS+ C
Sbjct: 167 RHHSSPQTQQLMDNQHTPHFVFPVPSPNSRIC 198
>SB_4516| Best HMM Match : rve (HMM E-Value=6.5)
Length = 262
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 2 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 55
Query: 648 ASK 656
K
Sbjct: 56 TVK 58
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ +
Sbjct: 990 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1043
Query: 648 ASK 656
K
Sbjct: 1044 TVK 1046
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 210 LDATAPEDEEGIERATDLVHGLIAD 284
L APED EG+ER + V G AD
Sbjct: 3127 LQHAAPEDREGLEREVNGVKGAAAD 3151
>SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15)
Length = 374
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 468 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 647
IF+ HG D +V+ Q T++ K F STY G H+++ ++ FIE+ +
Sbjct: 237 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYEEANGFIERNVQ 290
Query: 648 ASK 656
K
Sbjct: 291 TVK 293
>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 93 STIAGIRGPHVKVICPTASTMPVTLNNGFR 182
+ + G R PH + P+TLNNGF+
Sbjct: 544 AALRGFRNPHDMHVFNYGGAAPLTLNNGFQ 573
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 604 PNSKTCKNL*KRPCQHQSKCTIYYLKRLSYIQSTILGCANYI 729
P C N KR C ++CT YYLKR + C NY+
Sbjct: 247 PPLTRCTNYLKRRCPPLTRCT-YYLKRRC---PPLTKCTNYL 284
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 604 PNSKTCKNL*KRPCQHQSKCTIYYLKRLSYIQSTILGCANYI 729
P C N KR C ++CT YYLKR + C NY+
Sbjct: 118 PPLTMCTNYRKRRCPPLTRCT-YYLKRRC---PPLTKCTNYL 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,211,859
Number of Sequences: 59808
Number of extensions: 501891
Number of successful extensions: 1150
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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