Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0531
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 202 3e-52
AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein ... 198 4e-51
AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein ... 198 4e-51
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 32 0.36
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 32 0.36
U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical p... 30 1.5
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 30 1.5
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 4.5
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 29 4.5
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 202 bits (492), Expect = 3e-52
Identities = 96/210 (45%), Positives = 129/210 (61%), Gaps = 1/210 (0%)
Frame = +3
Query: 6 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 182
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 183 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 362
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 363 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLK 542
TYP++L G++ LS + + FPG A PIF HG D +V ++GQM+ +K
Sbjct: 128 GLTYPQKLGGIVGLSSFFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIK 187
Query: 543 TFMKNVKFSTYQGLAHSSSIAELKDMQEFI 632
F V+ TY+G+ HSS E++D++ F+
Sbjct: 188 KFNPKVELHTYRGMQHSSCGEEMRDVKTFL 217
>AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 198 bits (482), Expect = 4e-51
Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 182
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 183 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 362
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 363 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLK 542
TYP++L G++ LS + FPG A PIF HG D +V ++GQM+ +K
Sbjct: 128 GLTYPQKLGGIVGLSSXFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIK 187
Query: 543 TFMKNVKFSTYQGLAHSSSIAELKDM 620
F V+ TY+G+ HSS E++D+
Sbjct: 188 KFNPKVELHTYRGMQHSSCGEEMRDV 213
>AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 198 bits (482), Expect = 4e-51
Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 182
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 183 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 362
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 363 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLK 542
TYP++L G++ LS + FPG A PIF HG D +V ++GQM+ +K
Sbjct: 128 GLTYPQKLGGIVGLSSXFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMSEQYIK 187
Query: 543 TFMKNVKFSTYQGLAHSSSIAELKDM 620
F V+ TY+G+ HSS E++D+
Sbjct: 188 KFNPKVELHTYRGMQHSSCGEEMRDV 213
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 272
P++ T+PV TL N+G R + F LR +D + +D+ GIE T +HG
Sbjct: 783 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 830
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 272
P++ T+PV TL N+G R + F LR +D + +D+ GIE T +HG
Sbjct: 711 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 758
>U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical
protein T20B5.3 protein.
Length = 837
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 GWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWF-DLRTLDATAPE 230
G A+T IR + ++C T + NG R+ S F D RTLD E
Sbjct: 448 GLATTAEEIRNQRLSLLCATCEMYYLPFENGPRVQSMFKDFRTLDPLQSE 497
>Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical
protein C08H9.3b protein.
Length = 123
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 47 AYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGFDYARDAQQRFPY 184
AY+ T F HR+WM W QRP C+ Y ++ D F Y
Sbjct: 24 AYVSTDFEVHRNWMAV--TW-QRPLCEWYTEATSEWTLDYPPFFAY 66
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 47 AYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGFDYARDAQQRFPY 184
AY+ T F HR+WM W QRP C+ Y ++ D F Y
Sbjct: 24 AYVSTDFEVHRNWMAV--TW-QRPLCEWYTEATSEWTLDYPPFFAY 66
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.4
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Frame = +3
Query: 12 VIIAAQARHTASLIFLHGLGDTGHGWASTI---AGIRG------PHVKVICPTASTMPVT 164
VI+A A +T L+ L G+G H + I A + G H+++ ST PVT
Sbjct: 298 VILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLEIYVQQESTQPVT 357
Query: 165 LNN--GFRMP--------SWFDLRT-LDATAPEDEEGIERATDLV 266
L N ++ P WF RT L A++ + G R+ D V
Sbjct: 358 LYNKSSWKFPHNMIKIGLEWFTNRTGLGASSHLETGGFARSDDTV 402
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 582 LAHSSSIAELKDMQEFIEKTLPASK*MYHLLLEKIIIHSV 701
L H + I+E ++ +E +EK + AS M+ L+ ++ H V
Sbjct: 1917 LKHIAQISEEEEEEEGVEKRMTASLDMFDLIYSEVDAHDV 1956
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 384 LAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHG 485
LA + +S +L FPGGL+AP+ F G
Sbjct: 136 LAYAIPMSIYLAIFTIFPGGLRAPIAFAFFNREG 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,493
Number of Sequences: 27780
Number of extensions: 376461
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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