Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0531
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 562 LTFFINVLRHDAVICPHLKDTTGS 491
           L   INVL H  VIC   KD T +
Sbjct: 11  LFVIINVLLHGQVICFVCKDITST 34


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 387 AGVMSLSCWLPRHGYFPG 440
           A V+  SC+  R+ YFPG
Sbjct: 92  ATVLPNSCYQERYEYFPG 109


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 387 AGVMSLSCWLPRHGYFPG 440
           A V+  SC+  R+ YFPG
Sbjct: 92  ATVLPNSCYQERYEYFPG 109


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 318 ELYLQAHRL*LHQQSTHGRDQWLSQY 241
           E  L A  L L  +S HG  +W +Q+
Sbjct: 4   EFVLLASLLYLGNESVHGIQKWGTQF 29


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 661 IYFDAGRVFSINSCMSLSSAM 599
           +Y DA  V ++NSC S+ S +
Sbjct: 311 VYKDALIVCTVNSCTSMLSGI 331


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 661 IYFDAGRVFSINSCMSLSSAM 599
           +Y DA  V ++NSC S+ S +
Sbjct: 364 VYKDALIVCTVNSCTSMLSGI 384


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 110 QRPSCQSYMSYGFDYARDAQQRFP 181
           Q+PS ++Y    F Y  D  Q  P
Sbjct: 451 QQPSIRTYTQQQFPYVHDTLQIQP 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,964
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)