Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0531
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20060.2 68418.m02389 phospholipase/carboxylesterase family p... 119 2e-27
At5g20060.1 68418.m02388 phospholipase/carboxylesterase family p... 119 2e-27
At1g52700.1 68414.m05952 phospholipase/carboxylesterase family p... 103 2e-22
At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p... 101 7e-22
At3g15650.1 68416.m01984 phospholipase/carboxylesterase family p... 96 2e-20
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil... 54 1e-07
At1g52695.1 68414.m05951 phospholipase/carboxylesterase family p... 49 3e-06
At1g47780.1 68414.m05314 acyl-protein thioesterase-related conta... 46 2e-05
At1g51300.1 68414.m05769 acyl-protein thioesterase-related cont... 38 0.009
At3g12460.1 68416.m01551 hypothetical protein 31 0.79
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 28 5.6
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi... 28 5.6
At3g62020.2 68416.m06965 germin-like protein (GLP10) identical t... 28 7.3
At3g62020.1 68416.m06966 germin-like protein (GLP10) identical t... 28 7.3
At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family prote... 28 7.3
At1g52760.1 68414.m05964 esterase/lipase/thioesterase family pro... 28 7.3
At5g36160.1 68418.m04357 aminotransferase-related similar to nic... 27 9.7
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 27 9.7
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi... 27 9.7
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi... 27 9.7
At4g00450.1 68417.m00062 expressed protein 27 9.7
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 27 9.7
>At5g20060.2 68418.m02389 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 119 bits (286), Expect = 2e-27
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + +H A++++LHGLGD G W+ + + P++K ICPTA + P++L GF +W
Sbjct: 25 VVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPSQPISLFGGFPSTAW 84
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQG---------- 341
FD+ ++ P+D EG++ A V L+++E PAD K+ +GGFS G
Sbjct: 85 FDVVDINEDGPDDMEGLDVAAAHVANLLSNE-----PADIKLGVGGFSMGAATSLYSATC 139
Query: 342 -GXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLK------APVDLPIFQAHGDKDPV 500
YP L+ ++ LS WLP G L+ LPI HG D V
Sbjct: 140 FALGKYGNGNPYPINLSAIIGLSGWLPCAKTLAGKLEEEQIKNRAASLPIVVCHGKADDV 199
Query: 501 VSFKWGQMTA-SCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
V FK+G+ ++ + L K V F Y L H + EL ++ ++ TL
Sbjct: 200 VPFKFGEKSSQALLSNGFKKVTFKPYSALGHHTIPQELDELCAWLTSTL 248
>At5g20060.1 68418.m02388 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 119 bits (286), Expect = 2e-27
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + +H A++++LHGLGD G W+ + + P++K ICPTA + P++L GF +W
Sbjct: 25 VVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPSQPISLFGGFPSTAW 84
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQG---------- 341
FD+ ++ P+D EG++ A V L+++E PAD K+ +GGFS G
Sbjct: 85 FDVVDINEDGPDDMEGLDVAAAHVANLLSNE-----PADIKLGVGGFSMGAATSLYSATC 139
Query: 342 -GXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLK------APVDLPIFQAHGDKDPV 500
YP L+ ++ LS WLP G L+ LPI HG D V
Sbjct: 140 FALGKYGNGNPYPINLSAIIGLSGWLPCAKTLAGKLEEEQIKNRAASLPIVVCHGKADDV 199
Query: 501 VSFKWGQMTA-SCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
V FK+G+ ++ + L K V F Y L H + EL ++ ++ TL
Sbjct: 200 VPFKFGEKSSQALLSNGFKKVTFKPYSALGHHTIPQELDELCAWLTSTL 248
>At1g52700.1 68414.m05952 phospholipase/carboxylesterase family
protein similar to lysophospholipase I [Mus musculus]
GI:1864159; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 255
Score = 103 bits (246), Expect = 2e-22
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + +H A+L++LHGLGD G + + + P++K ICPTA + PVT GF +W
Sbjct: 25 VVRPKGKHQATLVWLHGLGDNGSSSSQLMDSLHLPNIKWICPTAPSRPVTSLGGFTCTAW 84
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQG---------- 341
FD+ + +D EG++ + + L++ E PAD KV +GGFS G
Sbjct: 85 FDVGEISEDGHDDLEGLDASASHIANLLSSE-----PADVKVGIGGFSMGAAISLYSATC 139
Query: 342 -GXXXXXXXXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVD-------LPIFQAHGDKDP 497
YP L V+ LS WLP ++ + LPI HG D
Sbjct: 140 YALGRYGTGHAYPINLQAVVGLSGWLPGWKSLRSKIECSFEAARRAASLPIILTHGTSDD 199
Query: 498 VVSFKWGQMTASCL-KTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
VV +++G+ +A L + F Y+GL H + E+ ++ ++ L
Sbjct: 200 VVPYRFGEKSAQSLGMAGFRLAMFKPYEGLGHYTVPREMDEVVHWLTTML 249
>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
protein similar to acyl-protein thioesterase-1 [Homo
sapiens] GI:9965372; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 471
Score = 101 bits (241), Expect = 7e-22
Identities = 71/214 (33%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Frame = +3
Query: 48 LIFLHGLGDTGHGWASTIAGIRGPHVKV---ICPTASTMPVTLNNGFRMPSWFDLRTLD- 215
+++LHGLGD+G + + + P+A PVT NNG M SWFD+ L
Sbjct: 6 ILWLHGLGDSGPANEPIQTQFKSSELSNASWLFPSAPFNPVTCNNGAVMRSWFDVPELPF 65
Query: 216 -ATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAG 392
+P DE + A VH +I E+ G + V + G SQGG YP+ L G
Sbjct: 66 KVGSPIDESSVLEAVKNVHAIIDQEIAEGTNPENVFICGLSQGGALTLASVLLYPKTLGG 125
Query: 393 VMSLSCWLPRH----GYFP-GGLKAP-----VDLPIFQAHGDKDPVVSFKWGQMTASCLK 542
LS W+P FP K P ++ PI +HG D +V F+ GQ LK
Sbjct: 126 GAVLSGWVPFTSSIISQFPEEAKKVPHLCFLINTPILWSHGTDDRMVLFEAGQAALPFLK 185
Query: 543 TFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
+F Y GL HS S ELK ++ +I++ L
Sbjct: 186 EAGVTCEFKAYPGLGHSISNKELKYIESWIKRRL 219
Score = 90.2 bits (214), Expect = 1e-18
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Frame = +3
Query: 48 LIFLHGLGDTGHGWASTIAGIRGP---HVKVICPTASTMPVTLNNGFRMPSWFDLRTLDA 218
+++LHGLGD+G R + K + P+A PV+ N G MPSWFD+ L
Sbjct: 291 ILWLHGLGDSGPANEPIKTLFRSQEFRNTKWLFPSAPPNPVSCNYGAVMPSWFDIPELPL 350
Query: 219 TA--PEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAG 392
TA P+DE + +A VH +I E+ G+ + V + GFSQGG YP+ + G
Sbjct: 351 TAGSPKDESSLLKAVKNVHAIIDKEIAGGINPENVYICGFSQGGALTLASVLLYPKTIGG 410
Query: 393 VMSLSCWLPRHGYFPGGLKAPV-DLPIFQAHGDKDPVVSFKWGQ 521
S W+P + PI +HG D V F+ GQ
Sbjct: 411 GAVFSGWIPFNSSITNQFTEDAKKTPILWSHGIDDKTVLFEAGQ 454
>At3g15650.1 68416.m01984 phospholipase/carboxylesterase family
protein low similarity to lysophospholipase I [Mus
musculus] GI:1864159; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 255
Score = 95.9 bits (228), Expect = 2e-20
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 20/230 (8%)
Frame = +3
Query: 15 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 194
++ + +H A++++LHGLGD G + + + P++K ICPTA + PV+L GF +W
Sbjct: 25 VVRPKGKHQATIVWLHGLGDNGSSSSQLLESLPLPNIKWICPTAPSRPVSLLGGFPCTAW 84
Query: 195 FDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPAD-KVLLGGFSQGGXXXXXXXX- 368
FD+ + +D EG++ + + L++ E P D KV +GGFS G
Sbjct: 85 FDVGEISEDLHDDIEGLDASAAHIANLLSAE-----PTDVKVGIGGFSMGAAIALYSTTC 139
Query: 369 ----------TYPERLAGVMSLSCWLPRHGYFPGGLKAP-------VDLPIFQAHGDKDP 497
Y L + LS WLP +++ +PI AHG D
Sbjct: 140 YALGRYGTGHAYTINLRATVGLSGWLPGWRSLRSKIESSNEVARRAASIPILLAHGTSDD 199
Query: 498 VVSFKWGQMTA-SCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTL 644
VV +++G+ +A S + F Y+GL H + E+ ++ ++ L
Sbjct: 200 VVPYRFGEKSAHSLAMAGFRQTMFKPYEGLGHYTVPKEMDEVVHWLVSRL 249
>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
to hypothetical protein GB:AAD55623 GI:5903064 from
[Arabidopsis thaliana] contains similarity to
acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063
Length = 186
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +3
Query: 36 HTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLD 215
H A++++LH +G+T + ++K ICPTA PVT+ G +WFD+ +
Sbjct: 55 HKATIVWLHDIGETSANSVRFARQLGLRNIKWICPTAPRRPVTILGGMETNAWFDIAEIS 114
Query: 216 ATAPEDEEGIERATDLVHGLIADEVKAGV 302
+DE + A + L +D +
Sbjct: 115 ENMQDDEVSLHHAALSIANLFSDHASPNI 143
>At1g52695.1 68414.m05951 phospholipase/carboxylesterase family
protein contains Pfam profile: PF02230
phospholipase/carboxylesterase; supported by full length
cDNA gi:26450919 from [Arabidopsis thaliana]
Length = 231
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 36 HTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLD 215
H A++++LH +G+TG + +R P++K ICPTA VT G +W D+ +
Sbjct: 25 HKATIVWLHDVGNTGFNSLEPLQNLRLPNIKWICPTAPRRRVTSLGGEITNAWCDIAKVS 84
Query: 216 ATAPEDEEGIERATDLVHGLIADE 287
+D + + + L ++E
Sbjct: 85 ENMQDDFGTLNYVNEYITSLFSNE 108
>At1g47780.1 68414.m05314 acyl-protein thioesterase-related contains
similarity to acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063 contains similarity to
acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063
Length = 126
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 87 WASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWFDLRTLDATAPEDEEGIERATDLV 266
W + G +VK ICPTA P+T+ G +WFD+ L +D + A +
Sbjct: 12 WVLKMYGWMNKNVKWICPTAPRRPLTILGGMETNAWFDIAELSENMQDDVASLNHAALSI 71
Query: 267 HGLIADEVKAGV 302
L+++E G+
Sbjct: 72 ANLLSEEPTNGI 83
>At1g51300.1 68414.m05769 acyl-protein thioesterase-related
contains similarity to acyl-protein thioesterase-1 [Homo
sapiens] gi|9965372|gb|AAG10063
Length = 212
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 24/160 (15%)
Frame = +3
Query: 12 VIIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPT-------------AST 152
V + +ARH A++++LH L ++G+ + + +VK ICP+ A
Sbjct: 28 VTVTPRARHQATIVWLHDLNESGYDSSELVKSFSLYNVKWICPSSPLISNVGFGGAPARA 87
Query: 153 MPVTLNNGFR------MPSWFDLRTLDATAPE--DEEGIERATDLVHGLIADE---VKAG 299
++L F+ + F + + P+ + EG++ + V GL+ +E V G
Sbjct: 88 CKISLLQNFKEEHAISIHRGFKVNEFSSRMPDPYEMEGLKNSAAHVAGLLKNEPENVMKG 147
Query: 300 VPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWLP 419
V + GG ++P ++ V+ ++CWLP
Sbjct: 148 VAGYGI--GGALALHIATCYALGSFPIQIRAVVGINCWLP 185
>At3g12460.1 68416.m01551 hypothetical protein
Length = 242
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 588 HSSSIAELKDMQEFIEKTLPASK*MYHLLLEKIIIHSVYYFGM 716
H IAEL D++EF+ + + MY+ LEKI+ ++ Y G+
Sbjct: 155 HQLEIAELMDLREFVSDS-SGRRSMYNYSLEKIVEENLGYPGV 196
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 492 PYHHELGILVNQQEPLSLQGNNHVEVASRIGT*LLLISQDM*AQHIELMLHL 337
P +E+G LV + PL+ NNHV SR ++ +Q + + + L++ L
Sbjct: 92 PSGNEIGFLVPSKVPLNESYNNHVPPGSRYSFKQVIHNQRIAGRKLGLVIDL 143
>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 471
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 492 PYHHELGILVNQQEPLSLQGNNHVEVASRIGT*LLLISQDM*AQHIELMLHL 337
P +E+G LV + PL+ NNHV SR ++ +Q + + + L++ L
Sbjct: 92 PSGNEIGFLVPSKVPLNESYNNHVPPGSRYSFKQVIHNQRIAGRKLGLVIDL 143
>At3g62020.2 68416.m06965 germin-like protein (GLP10) identical to
germin-like protein subfamily 2 member 4 [SP|Q9M263]
Length = 191
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 378 ERLAGVMSLSCWLPRHGYFPGGLKAPVDLP-----IFQAHGDKDPVVSFKWGQMTASCLK 542
E++AG+ +L L R Y PGGL P P IF G+ D ++ A K
Sbjct: 53 EKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFA---K 109
Query: 543 TFMKNVKFSTYQGLAH 590
T K F +GL H
Sbjct: 110 TVKKGEVFVFPRGLIH 125
>At3g62020.1 68416.m06966 germin-like protein (GLP10) identical to
germin-like protein subfamily 2 member 4 [SP|Q9M263]
Length = 220
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 378 ERLAGVMSLSCWLPRHGYFPGGLKAPVDLP-----IFQAHGDKDPVVSFKWGQMTASCLK 542
E++AG+ +L L R Y PGGL P P IF G+ D ++ A K
Sbjct: 82 EKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFA---K 138
Query: 543 TFMKNVKFSTYQGLAH 590
T K F +GL H
Sbjct: 139 TVKKGEVFVFPRGLIH 154
>At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 263
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 237 EGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLSCWL 416
E I+ D L+ G DKV+L S GG +P ++A ++ L+ ++
Sbjct: 52 EEIQTLKDYCKPLLELLNSLGSDDDKVILVAHSMGGIPAALASDIFPSKIATIVFLTAFM 111
Query: 417 P 419
P
Sbjct: 112 P 112
>At1g52760.1 68414.m05964 esterase/lipase/thioesterase family
protein low similarity to monoglyceride lipase from
[Homo sapiens] GI:14594904, [Mus musculus] GI:2632162;
contains Interpro entry IPR000379
Length = 332
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +3
Query: 456 VDLPIFQAHGDKD----PVVSFKWGQMTASCLKT--FMKNVKFSTYQGLAHSSSIAELKD 617
V +P+F AHG D P S + +S KT + + S QG ++ LKD
Sbjct: 256 VTIPVFTAHGTADGVTCPTSSKLLYEKASSADKTLKIYEGMYHSLIQGEPDENAEIVLKD 315
Query: 618 MQEFIEK 638
M+E+I++
Sbjct: 316 MREWIDE 322
>At5g36160.1 68418.m04357 aminotransferase-related similar to
nicotianamine aminotransferase B GI:6469087 from
[Hordeum vulgare subsp. vulgare]
Length = 420
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 438 GGLKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTY 575
GG PV +P+ HGD P SF+ Q + +++ KF+ Y
Sbjct: 38 GGDVRPV-IPL--GHGDPSPFPSFRTDQAAVEAICDAVRSTKFNNY 80
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 123 VKVICPTASTMPVTLNN-----GFRMPSWFDLRTLDATAPEDEEGIERATD 260
+K+ P + P++ N GF P WFD +D D+E E ++D
Sbjct: 376 IKIWTPGGTEKPLSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSD 426
>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 852
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 TYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVS 506
T P + + S + + P++GY P P +P + +HG VVS
Sbjct: 324 TSPAHVYNMQSPAVYSPQYGYGPYTNMIPQFMPGYPSHGSVPVVVS 369
>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 861
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 TYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVS 506
T P + + S + + P++GY P P +P + +HG VVS
Sbjct: 324 TSPAHVYNMQSPAVYSPQYGYGPYTNMIPQFMPGYPSHGSVPVVVS 369
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 284 ISNQPMDEISGSLNTFFIFRSCSVQRS*IKPRGHTETVVE 165
+S+Q +IS SL++ R+C+ + + PR HT++ V+
Sbjct: 693 LSDQKSKKISTSLSSVIFPRACNAKSNSKGPRKHTKSSVD 732
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 661 IYFDAGRVFSINSCMSLSSAMDELCASPWYVENLTFFI 548
IY D + SIN+ L+ ++DEL + + V LTF++
Sbjct: 146 IYNDVNNISSINAFQDLAGSLDELKTTSFIVV-LTFWV 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,271
Number of Sequences: 28952
Number of extensions: 352548
Number of successful extensions: 867
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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