Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0529
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.0  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 306 TAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAV 172
           T P PG  +P+ ST  T  + + +        A   P+   D +V
Sbjct: 429 TTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSV 473


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 502 RKPQMGRSGSNRRNTPGQPRS 564
           R+P+ GR    RRN   +PR+
Sbjct: 217 RQPKTGREDQTRRNPYYRPRT 237


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 114 TSAASPIILASNTSSP 67
           TS+ SP  +ASN S+P
Sbjct: 39  TSSGSPASVASNASAP 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,486
Number of Sequences: 336
Number of extensions: 2417
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)