Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0529
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 288 6e-79
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 130 2e-31
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 105 6e-24
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 99 5e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 99 7e-22
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 90 3e-19
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 90 3e-19
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 72 7e-14
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 35 0.009
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.066
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.81
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.9
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 2.5
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 27 3.3
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 5.7
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 26 5.7
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 5.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.6
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 10.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 10.0
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 288 bits (706), Expect = 6e-79
Identities = 143/225 (63%), Positives = 180/225 (80%), Gaps = 4/225 (1%)
Frame = +2
Query: 11 KKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLI 190
++IAKA+GAT L+SL+N++GEE FE++ +G A EV+QE+ DD+ IL+KG A ++AS++
Sbjct: 322 RRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIV 381
Query: 191 LRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQL 370
LRGP + DEMERS HD+L V+R LESGK+VPGGGAVE ALSIYLENFAT+L SREQL
Sbjct: 382 LRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQL 441
Query: 371 AIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQ----TKVEHANLKWVGLDLTE 538
AIA FAQ+LL+IP+TLAVNAA+D+T+L AKLRAYH +SQ T V+ K GLDL
Sbjct: 442 AIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLN 501
Query: 539 GTLRDNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIKLDPEQ 673
G +RDN+ AGVLEP++SK+KSLK A EA I ILRID IKLDPE+
Sbjct: 502 GVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIKLDPER 546
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 130 bits (313), Expect = 2e-31
Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
Frame = +2
Query: 14 KIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKG-PAARTAASLI 190
++ +A G + ++ +N+ E +G + QI D+ L +G P A+T +LI
Sbjct: 326 RVVQAVGGSIQSTCSNI------EEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTC-TLI 378
Query: 191 LRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQL 370
LRG D + E+ERS HDA+ V+ L++ +V GGGA E LS YL +++ T+S ++Q
Sbjct: 379 LRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQN 438
Query: 371 AIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLR 550
IAAFA+SL VIP+ L NA D+T+++ KLR H + W G+D+ +
Sbjct: 439 FIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGE--------MWAGVDMDSEGVA 490
Query: 551 DNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIKLDPEQ 673
+N V EP+ K ++ ATEAA IL +D+ IK +P Q
Sbjct: 491 NNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQ 531
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 105 bits (252), Expect = 6e-24
Identities = 61/191 (31%), Positives = 103/191 (53%)
Frame = +2
Query: 95 IGEAAEVIQEQICDDQLILIKGPAARTAASLILRGPTDAYCDEMERSAHDALCAVRRVLE 274
+G ++ + I +D++I G A A +++LRG T DE ER+ HDAL + + +
Sbjct: 339 LGHCKKIEEIIIGEDKMIKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVA 398
Query: 275 SGKLVPGGGAVEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDLV 454
++ GGG E ++ +E AT ++ +A++AFA++L +P LA NA D+++LV
Sbjct: 399 ESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELV 458
Query: 455 AKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKFATEAAITI 634
A+L+A H +GLD+ EG + D A G+LE K + +E A +
Sbjct: 459 AQLKAAHYDGNDT--------MGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLL 510
Query: 635 LRIDDMIKLDP 667
LR+D ++K P
Sbjct: 511 LRVDTILKAAP 521
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 99.1 bits (236), Expect = 5e-22
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 1/194 (0%)
Frame = +2
Query: 74 EVFEANMIGEAAEVIQEQICDDQLILIKGPA-ARTAASLILRGPTDAYCDEMERSAHDAL 250
E F + +G A V + ++++ G A S++ RG +E ERS HDAL
Sbjct: 338 ESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDAL 397
Query: 251 CAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVNA 430
C +R +++ L+ GGG+ E + L A L RE + I AF+++L +IP TLA NA
Sbjct: 398 CVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENA 457
Query: 431 ARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKF 610
+A +V +LR+ H + + K G+++ +G + + L VL+P + I +++
Sbjct: 458 GLNAIQVVTELRSRHANGE--------KTAGINVRKGIVTNILEENVLQPLLVNISAIQL 509
Query: 611 ATEAAITILRIDDM 652
A E I++IDD+
Sbjct: 510 AAETTKMIMKIDDI 523
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 98.7 bits (235), Expect = 7e-22
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 1/217 (0%)
Frame = +2
Query: 8 SKKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQ-EQICDDQLILIKGPAARTAAS 184
+ +IA+A GA + L ++ ++V G + +++ D+ + G A +
Sbjct: 318 NNRIARACGANIVNRLEDLREKDV------GTGCGLFYIDKLGDEYYTFLTGCKNPKACT 371
Query: 185 LILRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSRE 364
++LRGP+ +E+ER+ DA+ R V KL PGGGA E A+S+ L A ++
Sbjct: 372 ILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVA 431
Query: 365 QLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGT 544
Q A A ++ +IP+TL N + + +LRA H Q H+ G+D G
Sbjct: 432 QWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQ----HS----FGIDGETGR 483
Query: 545 LRDNLAAGVLEPAISKIKSLKFATEAAITILRIDDMI 655
+ D GV EP K++S+K A E+A +LR+DD++
Sbjct: 484 VVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 89.8 bits (213), Expect = 3e-19
Identities = 56/213 (26%), Positives = 106/213 (49%)
Frame = +2
Query: 17 IAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLILR 196
IA AT + ++ +++ A ++ E + D++++I+ A A ++ +R
Sbjct: 335 IAIATNGRIVPRFEDLSSDKLGSAGIVRE----VSFGTTRDKILVIEKCANSRAVTVFVR 390
Query: 197 GPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAI 376
G DE +R+ HDALC VR ++ ++V GGGA E + S+ + A + +Q ++
Sbjct: 391 GSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSM 450
Query: 377 AAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDN 556
AFA +L IP LA N+ + + + ++A H N ++G+D + D
Sbjct: 451 GAFADALDTIPLALAENSGLSSIEALTAVKARHVKE-------NKAYLGIDCLQTGSNDM 503
Query: 557 LAAGVLEPAISKIKSLKFATEAAITILRIDDMI 655
V++P I K + L AT+ +L+++D+I
Sbjct: 504 RKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 89.8 bits (213), Expect = 3e-19
Identities = 60/222 (27%), Positives = 118/222 (53%), Gaps = 3/222 (1%)
Frame = +2
Query: 11 KKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLI 190
+++ + GAT L + EE+ +++ E E+ +++ + + RTA +++
Sbjct: 322 RRLCRVVGATPLARMGVPMPEEMGSVDVV-ETIEIGGDRVTVFRQV---EDITRTA-TIV 376
Query: 191 LRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQL 370
LRG T Y D++ER+ D + V+ +++ +L+ G GA + L I L + Q
Sbjct: 377 LRGATKTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQH 436
Query: 371 AIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDL---TEG 541
AI + ++ V+P+T++ NA D TD+++KL A H+ N + +G+D+ +G
Sbjct: 437 AIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKE-------NGESIGVDVECENDG 489
Query: 542 TLRDNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIKLDP 667
TL D AG+ + ++K +++ ATE +T+L +D ++ P
Sbjct: 490 TL-DAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVVMSKP 530
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 7e-14
Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Frame = +2
Query: 92 MIGEAAEVIQEQICDDQLILIKGPAARTAASLILRGPTDAYCDEMERSAHDALCAVRRVL 271
++G A V + + +++ ++ +A++++ GP +++ + D L AV+ +
Sbjct: 342 VLGWAGSVYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAV 401
Query: 272 ESGKLVPGGGAVEAALSIYLEN--FATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDAT 445
E L+ G GA E A + +L N A + + ++ + A+A +LL+IPKTLA N++ D
Sbjct: 402 EDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQ 461
Query: 446 DLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKFATEAA 625
D + L+ E + VGLDL G D G+ + L AT A
Sbjct: 462 DAIVALQE---------EASEGYKVGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATVIA 512
Query: 626 ITILRIDDMIK 658
++ +D +++
Sbjct: 513 SNLISVDQILR 523
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 35.1 bits (77), Expect = 0.009
Identities = 50/145 (34%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Frame = -3
Query: 456 ATRSVASRAALTANVFGITRRDCANAAIANCSRELRVVAKFSK*MESAASTAPPPGTSLP 277
AT S S A TA+V G + A A+ + S A + S+ +TA S+
Sbjct: 970 ATGSSTSSIA-TASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATA-----SVT 1023
Query: 276 DSSTRRTAHSASCADRSISS-QYASVGPRRISDAAVRAAGPLIKIS*SSQICSWIT-SAA 103
DSST A +AS D S SS ASV S A +A S SS + IT S +
Sbjct: 1024 DSSTSSVA-TASATDSSTSSIAVASVTGSSTSSVATASA---TDSSTSSVATASITGSLS 1079
Query: 102 SPIILASNTSSPSILVKEVKKVAPV 28
S I AS T SP+ V V + V
Sbjct: 1080 SSIATASVTGSPTSSVTAVSSTSSV 1104
Score = 28.3 bits (60), Expect = 1.1
Identities = 34/136 (25%), Positives = 59/136 (43%)
Frame = -3
Query: 462 SLATRSVASRAALTANVFGITRRDCANAAIANCSRELRVVAKFSK*MESAASTAPPPGTS 283
S+A SV + + +T D + +++A S + + + +ST+ S
Sbjct: 1003 SIAAASVTGSSTSSVATASVT--DSSTSSVATASATDSSTSSIAVASVTGSSTSSVATAS 1060
Query: 282 LPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS*SSQICSWITSAA 103
DSST A +AS S+SS A+ ++V A + ++ S I +AA
Sbjct: 1061 ATDSSTSSVA-TASITG-SLSSSIATASVTGSPTSSVTAVSSTSSVEGTAS--STIAAAA 1116
Query: 102 SPIILASNTSSPSILV 55
S L+S+ +S S V
Sbjct: 1117 SAATLSSDAASGSSTV 1132
Score = 25.8 bits (54), Expect = 5.7
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -3
Query: 315 AASTAPPPGTSLP--DSSTRRTAHSASCAD-RSISSQYASVGPRRISDAAVRAAGPLIKI 145
++ST+ P TSL SST T SAS + SISS +S S ++ +
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSS 640
Query: 144 S*SSQICSWITSAASPIILASNTSSPS 64
S S S ++S+ S I ++S+ S+ S
Sbjct: 641 SIISGSSSILSSSISTIPISSSLSTYS 667
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.3 bits (70), Expect = 0.066
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = -3
Query: 318 SAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS* 139
S+ ST+ P TS SST + S+S + + SS +S IS ++ ++ P S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS---SIISSSSSSSSSP---TST 286
Query: 138 SSQICSWITSAASPIILASNTSSPS 64
SS I S +S++SP +S SS S
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSS 311
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.81
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -3
Query: 288 TSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS*SS-QICSWIT 112
T ST T+ SAS + Q A+ + S+ +GP + S +S QI S I+
Sbjct: 253 TDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTIS 312
Query: 111 SAA----SPIILASNTSSPSI 61
S++ SP + S +S+ +I
Sbjct: 313 SSSFIVESPSVALSTSSTTTI 333
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = -3
Query: 387 ANAAIANCSRELRVVAKFSK*MESAASTAPPPGTSLPDSSTRRTAHSASCADRSISS 217
A+ A A + EL V +++ E + T+PPP +LP S + A +++C + + S
Sbjct: 153 ADGAAAMPTNELVSVDLYNQTPEISDLTSPPPPINLPLSYSATGAATSNCPPKYVRS 209
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.9
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = -3
Query: 318 SAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS* 139
SAAS++ +SL SST T SAS S++S A+ S + ++ I+
Sbjct: 79 SAASSSLTSSSSLASSSTNSTT-SASPTSSSLTSSSAT-SSSLASSSTTSSSLASSSITS 136
Query: 138 SSQICSWITSAASPIILASNTSSPSI 61
SS S ITS++ + +S+T+S S+
Sbjct: 137 SSLASSSITSSS---LASSSTTSSSL 159
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 321 ESAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDA 178
ES A PP T + S +R+ + S +++ A +GP + SDA
Sbjct: 40 ESPNVQASPPKTHIYTSPRKRSVNLKSLPFETLTLDSAPLGPLQFSDA 87
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +2
Query: 305 VEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSS 484
V+ L+ +LE+ AT + I + +Q+ IP+ + + + L + A S
Sbjct: 97 VQLNLTGFLESNATAFTEELWSLIISASQNQYGIPEKFILEKKEEISKLKDRTEASKEES 156
Query: 485 QTKVEHAN 508
+T +H+N
Sbjct: 157 KTVTDHSN 164
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = +2
Query: 296 GGAVEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYH 475
G AV A + L+NFAT + + A + + P+ + + T L+ L
Sbjct: 251 GWAVTAGIISCLDNFATLIVNNPDFTRFATTPNAPIFPQLITIPMGFGITTLIGVL---V 307
Query: 476 NSSQTKVEHANLKWVGLDLTEGTLRDNLAAGV 571
S+ + N+ W LDL + L + GV
Sbjct: 308 GSASKSIYGENI-WNPLDLLKSFLDHSNHHGV 338
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 340 CNYPQLPRAVGYCSVCAVS 396
C+ P++P V CSV AVS
Sbjct: 101 CDSPRIPAEVNVCSVLAVS 119
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 321 ESAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPL 154
+SAAS AP P S+P+ A S++ A+ + ++Q + D + P+
Sbjct: 83 KSAASPAPNPPASVPEKKVE--APSSTVAESTSTTQTVAAAAPSNPDTTATSEAPI 136
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 17 IAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDD 139
IA T +T + N+ G+E FEA+M + DD
Sbjct: 402 IANLQDETGVTRIANLGGDEDFEADMTDPTIAGFDHPLDDD 442
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 10.0
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +2
Query: 5 RSKKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLI 148
+SK I K A T LT D EV EAN + EAAE I+ + Q I
Sbjct: 35 QSKPIPKPV-AKETTVLTKKD-VEVEEANGVEEAAETIESDTKEVQNI 80
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 302 AVEAALSIYLENFATTLSSREQL----AIAAFAQSLLVIPKTLAVNAARDATDLVAKL 463
+++A+L++ E F + ++R L A A A+ +++ +A A DL+AKL
Sbjct: 626 SLQASLNMLTERFYSDDTARNALKEAKASRAMAEKMVIERDAMAAQVNLGAEDLIAKL 683
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,480
Number of Sequences: 5004
Number of extensions: 38140
Number of successful extensions: 166
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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