Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0529
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.7  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   8.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   8.1  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 321 ESAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAV---RAAGP 157
           E AA++ PP  TS+P++S R      S A +       ++  R +S  ++   RA GP
Sbjct: 84  EYAANSQPPRITSVPNTS-RLDKSEISLATKQACGFIDNIDKRNLSVTSMIQKRALGP 140


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 444 VASRAALTANVFGITRRDCANAAIANCSRELRVVA 340
           +AS+ ALT      T  DC  + +A C   ++V++
Sbjct: 162 LASKCALT------TLTDCLRSELAQCESNIKVIS 190


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 449 LVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLE 577
           L+  +  +    QTK E  NLK V L++    L       V E
Sbjct: 110 LIGLVERHKKRGQTKEEFQNLKEVMLEVLRQALGKQYTPEVAE 152


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 449 LVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLE 577
           L+  +  +    QTK E  NLK V L++    L       V E
Sbjct: 110 LIGLVERHKKRGQTKEEFQNLKEVMLEVLRQALGKQYTPEVAE 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,047
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)