Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0529
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 284 3e-77
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 136 1e-32
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 106 2e-23
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 101 3e-22
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 101 6e-22
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 96 2e-20
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 90 1e-18
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 90 1e-18
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 82 3e-16
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 81 9e-16
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 41 7e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 33 0.23
At3g21630.1 68416.m02728 protein kinase family protein contains ... 32 0.40
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 31 0.53
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 31 0.53
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 2.1
At5g41100.2 68418.m04997 expressed protein 29 3.8
At5g41100.1 68418.m04996 expressed protein 29 3.8
At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containi... 28 5.0
At3g13280.1 68416.m01672 expressed protein contains Pfam profile... 28 5.0
At5g62070.1 68418.m07790 calmodulin-binding family protein conta... 27 8.7
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 27 8.7
At2g34210.1 68415.m04186 KOW domain-containing transcription fac... 27 8.7
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro... 27 8.7
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 284 bits (697), Expect = 3e-77
Identities = 138/217 (63%), Positives = 174/217 (80%)
Frame = +2
Query: 11 KKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLI 190
+ +AKATGAT +T+ +M+GEE F+ +G A EV++E+I DD +ILIKG +A SLI
Sbjct: 320 RHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLI 379
Query: 191 LRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQL 370
LRG D DEMER+ HDALC V+R LES +V GGGAVE+ALS+YLE+ ATTL SREQL
Sbjct: 380 LRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQL 439
Query: 371 AIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLR 550
AIA FA +LL+IPK LAVNAA+DAT+LVAKLRAYH+++QTK + + +GLDL GT+R
Sbjct: 440 AIAEFADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTIR 499
Query: 551 DNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIKL 661
+NL AGV+EPA+SK+K ++FATEAAITILRIDDMIKL
Sbjct: 500 NNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKL 536
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 136 bits (330), Expect = 1e-32
Identities = 80/216 (37%), Positives = 129/216 (59%), Gaps = 1/216 (0%)
Frame = +2
Query: 14 KIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKG-PAARTAASLI 190
++A A G T TS+ N+ E ++G ++Q+ ++ + G P+ RTA +++
Sbjct: 324 RVAAAAGGTVQTSVNNIIDE------VLGTCEIFEEKQVGGERFNIFSGCPSGRTA-TIV 376
Query: 191 LRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQL 370
LRG D + +E ERS HDA+ VRR +++ +VPGGGA++ +S YL + T++ + QL
Sbjct: 377 LRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQL 436
Query: 371 AIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLR 550
I ++A++L VIP+ L NA DATD++ KLR H + E A+ G+D+ G +
Sbjct: 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH--AMQSGEGAS---YGVDINTGGIA 491
Query: 551 DNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIK 658
D+ A V EPA+ KI ++ ATEAA IL +D+ +K
Sbjct: 492 DSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 106 bits (254), Expect = 2e-23
Identities = 66/197 (33%), Positives = 107/197 (54%)
Frame = +2
Query: 83 EANMIGEAAEVIQEQICDDQLILIKGPAARTAASLILRGPTDAYCDEMERSAHDALCAVR 262
E+ +G + + I +D+LI G A S++LRG + DE ERS HDALC +
Sbjct: 334 ESVKLGHCKLIEEIMIGEDKLIHFSGCEMGQACSIVLRGASHHVLDEAERSLHDALCVLS 393
Query: 263 RVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDA 442
+ + +++ GGG E ++ ++ A + ++ AI AF+++L+ IP T+A NA D+
Sbjct: 394 QTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSRALVAIPTTIADNAGLDS 453
Query: 443 TDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKFATEA 622
+LVA+LRA H++ E N G+D+ G + D G+ E K L ATEA
Sbjct: 454 AELVAQLRAEHHT-----EGCN---AGIDVITGAVGDMEERGIYEAFKVKQAVLLSATEA 505
Query: 623 AITILRIDDMIKLDPEQ 673
+ ILR+D++I P +
Sbjct: 506 SEMILRVDEIITCAPRR 522
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 101 bits (243), Expect = 3e-22
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 2/196 (1%)
Frame = +2
Query: 74 EVFEANMIGEAAEVIQEQICDDQLILIKG--PAARTAASLILRGPTDAYCDEMERSAHDA 247
E F A +G A V + + D +++ I G RT S+++RG DE ERS HDA
Sbjct: 347 EHFRAEKLGHADLVEEASLGDGKILKITGIKDMGRTT-SVLVRGSNQLVLDEAERSLHDA 405
Query: 248 LCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAIAAFAQSLLVIPKTLAVN 427
LC VR ++ L+ GGGA E LS L +A L E + +FA++L VIP TLA N
Sbjct: 406 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKSFAEALEVIPYTLAEN 465
Query: 428 AARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLK 607
A + +V +LR H + G+++ +G + + L V++P + ++
Sbjct: 466 AGLNPIAIVTELRNKHAQGEIN--------AGINVRKGQITNILEENVVQPLLVSTSAIT 517
Query: 608 FATEAAITILRIDDMI 655
ATE IL+IDD++
Sbjct: 518 LATECVRMILKIDDIV 533
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 101 bits (241), Expect = 6e-22
Identities = 54/163 (33%), Positives = 92/163 (56%)
Frame = +2
Query: 179 ASLILRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSS 358
++++LRG TD+ D++ER+ D + + + ++VPG A E L+ L+ +A
Sbjct: 376 STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAQRLKEYANAEIG 435
Query: 359 REQLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTE 538
++ AI +A+S +PKTLA NA +A +++A L H S TK +G+DL E
Sbjct: 436 LDKYAITKYAESFEFVPKTLADNAGLNAMEIIAALYTGHGSGNTK--------LGIDLEE 487
Query: 539 GTLRDNLAAGVLEPAISKIKSLKFATEAAITILRIDDMIKLDP 667
G +D V + +K+ +LK+A++AA T+LR+D +I P
Sbjct: 488 GACKDVSETKVWDLFATKLFALKYASDAACTVLRVDQIIMAKP 530
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 95.9 bits (228), Expect = 2e-20
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 1/217 (0%)
Frame = +2
Query: 8 SKKIAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQ-EQICDDQLILIKGPAARTAAS 184
+ +IAKA GA + +E+ E++ IG A + + ++I DD I A +
Sbjct: 320 NNRIAKACGAVIVNR-----PDELQESD-IGTGAGLFEVKKIGDDFFSFIVDCKEPKACT 373
Query: 185 LILRGPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSRE 364
++LRGP+ + +E+ER+ DA+ R ++++ KLVPGGGA E +S L+ + T+ E
Sbjct: 374 VLLRGPSKDFINEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSATIEGIE 433
Query: 365 QLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGT 544
+ A A + IP+TLA N + + L+ H + + W G+D G
Sbjct: 434 KWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGEN-------AWTGIDGNTGA 486
Query: 545 LRDNLAAGVLEPAISKIKSLKFATEAAITILRIDDMI 655
+ D + + + K ++ K A EAA +LRIDD++
Sbjct: 487 IADMKESKIWDSYNVKAQTFKTAIEAACMLLRIDDIV 523
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 90.2 bits (214), Expect = 1e-18
Identities = 62/213 (29%), Positives = 106/213 (49%)
Frame = +2
Query: 17 IAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLILR 196
IA ATG + + E++ +A ++ E + ++ +++ I+ A A ++ +R
Sbjct: 253 IAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKE----RMLYIEHCANSKAVTVFIR 308
Query: 197 GPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAI 376
G +E +RS HDALC R ++ + +V GGGA E A S+ ++ A EQ AI
Sbjct: 309 GGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAI 368
Query: 377 AAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDN 556
AFA++L +P LA N+ + ++ ++ S Q K N+ + G+D + D
Sbjct: 369 RAFAEALDSVPMALAENSGLQPIETLSAVK----SQQIK---ENIPFYGIDCNDVGTNDM 421
Query: 557 LAAGVLEPAISKIKSLKFATEAAITILRIDDMI 655
V E I K + + AT+ IL+IDD+I
Sbjct: 422 REQNVFETLIGKQQQILLATQVVKMILKIDDVI 454
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 90.2 bits (214), Expect = 1e-18
Identities = 62/213 (29%), Positives = 106/213 (49%)
Frame = +2
Query: 17 IAKATGATFLTSLTNMDGEEVFEANMIGEAAEVIQEQICDDQLILIKGPAARTAASLILR 196
IA ATG + + E++ +A ++ E + ++ +++ I+ A A ++ +R
Sbjct: 329 IAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKE----RMLYIEHCANSKAVTVFIR 384
Query: 197 GPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAI 376
G +E +RS HDALC R ++ + +V GGGA E A S+ ++ A EQ AI
Sbjct: 385 GGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAI 444
Query: 377 AAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDN 556
AFA++L +P LA N+ + ++ ++ S Q K N+ + G+D + D
Sbjct: 445 RAFAEALDSVPMALAENSGLQPIETLSAVK----SQQIK---ENIPFYGIDCNDVGTNDM 497
Query: 557 LAAGVLEPAISKIKSLKFATEAAITILRIDDMI 655
V E I K + + AT+ IL+IDD+I
Sbjct: 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 82.2 bits (194), Expect = 3e-16
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Frame = +2
Query: 95 IGEAAEVIQEQICDDQLILIKGPAARTAASLILRGPTDAYCDEMERSAHDALCAVRRVLE 274
+G A V + + +++ ++ + +++++GP D +++ + D L +V+ LE
Sbjct: 347 LGWAGLVYEHVLGEEKYTFVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTLE 406
Query: 275 SGKLVPGGGAVEAALSIYLEN-FATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDL 451
+V G GA E A +L N T+ R QL + AFA +LLV+PKTLA NA D D+
Sbjct: 407 DECVVLGAGAFEVAARQHLINEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDV 466
Query: 452 VAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKFATEAAIT 631
+ L + H+ VGLDL +G D AG+ + K + + A
Sbjct: 467 IISLTSEHDKGNI---------VGLDLQDGEPVDPQLAGIFDNYSVKRQLINSGPVIASQ 517
Query: 632 ILRIDDMIK 658
+L +D++I+
Sbjct: 518 LLLVDEVIR 526
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 80.6 bits (190), Expect = 9e-16
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Frame = +2
Query: 95 IGEAAEVIQEQICDDQLILIKGPAARTAASLILRGPTDAYCDEMERSAHDALCAVRRVLE 274
+G A V + + +++ ++ + +++++GP D +++ + D L +V+ +E
Sbjct: 346 LGWAGLVYEHVLGEEKYTFVEQVKNPNSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTIE 405
Query: 275 SGKLVPGGGAVEAALSIYLEN-FATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDL 451
+V G GA E A +L N T+ R QL + AFA +LLV+PKTLA NA D D+
Sbjct: 406 DECVVLGAGAFEVAARQHLLNEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDV 465
Query: 452 VAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRDNLAAGVLEPAISKIKSLKFATEAAIT 631
+ L + H+ VGL+L +G D AG+ + K + + A
Sbjct: 466 IISLTSEHDKGNV---------VGLNLQDGEPIDPQLAGIFDNYSVKRQLINSGPVIASQ 516
Query: 632 ILRIDDMIK 658
+L +D++I+
Sbjct: 517 LLLVDEVIR 525
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 41.1 bits (92), Expect = 7e-04
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +2
Query: 197 GPTDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAI 376
G +++ E + DAL A R +E G ++PGGG + L+N T + +Q
Sbjct: 413 GASESEVGERKDRVTDALNATRAAVEEG-IIPGGGVALLYATKALDNLQT--ENEDQRRG 469
Query: 377 AAFAQSLLVIPK-TLAVNAARDATDLVAKLRAYHNSSQTKVEHANLKWVGLDLTEGTLRD 553
Q+ L P T+A NA D + +V KL +E + + G D +G D
Sbjct: 470 VQIVQNALKAPAFTIAANAGYDGSLVVGKL----------LEQDDCNF-GFDAAKGKYVD 518
Query: 554 NLAAGVLEPAISKIKSLKFATEAAITIL 637
+ AG+++P K+ A++++L
Sbjct: 519 MVKAGIIDPV--KVIRTALTDAASVSLL 544
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 203 TDAYCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLAIAA 382
T+ ++ + DA A +E G +VPGGGA LS + T ++ A
Sbjct: 429 TETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSTVIPAIKETFEDADERLGAD 487
Query: 383 FAQSLLVIPKTL-AVNAARDATDLVAKL 463
Q L+ P L A NA + +V K+
Sbjct: 488 IVQKALLSPAALIAQNAGVEGEVVVEKI 515
>At3g21630.1 68416.m02728 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 617
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 324 MESAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQY 211
MES + P P T++P S+T + SC D S+S +
Sbjct: 127 MESLQARNPFPATNIPLSATLNVLVNCSCGDESVSKDF 164
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 31.5 bits (68), Expect = 0.53
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Frame = -3
Query: 315 AASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS*S 136
+ + AP P S+ S + + S S SQ + P I + A R G + S
Sbjct: 235 SVAIAPAPAISVETESVKIISSSVLPIQNSPESQENNNHPEVIIEEASRTIGFNVSSSDL 294
Query: 135 SQICS---------WITSAASPIILASNTSSPSILVKEVKKVAPVALAI 16
S S +++S ASP + AS+T+SPS+ + P++L +
Sbjct: 295 SNDHSNNNGGYAGLFVSSTASPSLYASSTASPSLFAPS-SSMEPISLCL 342
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -3
Query: 420 ANVFGITRRDCANAAIANCSRELRVVAKFSK*MESAASTAPPPGTSLPDSSTRRTAHSAS 241
A++ G RD +NCS + + S M +A+ +PP ++ P ST + HS S
Sbjct: 232 ASIAGQESRDRRINPYSNCSCSISSHSD-SPAMSPSAAMSPPMNSTAPHWSTNQNTHSPS 290
Query: 240 CADRSI 223
+R++
Sbjct: 291 SPERTV 296
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +2
Query: 71 EEVFEANMIGEAAEVIQEQI-----CDDQLILIKGPAAR--TAASLILRGPTDAY 214
++ E M+G+ + VI ++ CD +L KG T ASL+ +GPT +Y
Sbjct: 1091 QDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSY 1145
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 300 PPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS*SSQICS 121
P P S ++ R HS S DR SS A + P + +D A R+ + + + + +
Sbjct: 301 PSPAGSATVNADPREEHSVSNRDRRTSSHSAPLFPDKKADLADRSMRQMTPSANAYILPT 360
Query: 120 WITSAASPI 94
+ S +SPI
Sbjct: 361 PVDSKSSPI 369
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 300 PPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPRRISDAAVRAAGPLIKIS*SSQICS 121
P P S ++ R HS S DR SS A + P + +D A R+ + + + + +
Sbjct: 301 PSPAGSATVNADPREEHSVSNRDRRTSSHSAPLFPDKKADLADRSMRQMTPSANAYILPT 360
Query: 120 WITSAASPI 94
+ S +SPI
Sbjct: 361 PVDSKSSPI 369
>At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 820
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 318 SAASTAPPPGTSLPDSSTRRTAHSASCADRSISSQYASVGPR 193
SA PPP SL S +T HS++ + +++ Q S+ R
Sbjct: 4 SALPLPPPPPLSLQSPSQNQTRHSSTFSPPTLTPQTPSIRSR 45
>At3g13280.1 68416.m01672 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 383
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 338 FATTLSSREQLAIAAFAQSLLVIPKTLAVNAARDATDLVAKLRAYHNSSQTKVEHANL 511
F T S+ + + + FAQ+ +++PK L ++ + L A HN+ +++ AN+
Sbjct: 158 FFRTTSAVKPVKLPCFAQNAILVPKALKISPRISRVKNMRILEASHNNVD-RLDPANM 214
>At5g62070.1 68418.m07790 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 403
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 508 PQMGRSGSNRRNTPGQPRSRS 570
PQ+G SGS RR TP P SRS
Sbjct: 283 PQVGSSGS-RRRTPFTPTSRS 302
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 212 YCDEMERSAHDALCAVRRVLESGKLVPGGGAVEAALSIYLENFATTLSSREQLA 373
YC E + H CAV ES K GGG E S + + + +++++A
Sbjct: 167 YCKECDYGTHVHSCAVYEDHESEK--RGGGREEGEASSAVSRMKSLMKAQDEMA 218
>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
family protein
Length = 990
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/68 (30%), Positives = 27/68 (39%)
Frame = -2
Query: 406 DHEERLRKRCNSQLLAGAEGSCKVLQVDGECRFDRAAAGHELAGLQHAAHGAQRVVRGPL 227
+H + RC+S +LAG L RF RA G+ H R RG
Sbjct: 626 EHTGFICTRCSSCVLAGGNFKTPALVPPSPRRFQRADMGYNPGA--GGRHQGGRGRRGDD 683
Query: 226 HLVAVRVR 203
HLV V+
Sbjct: 684 HLVGTYVK 691
>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family protein
similar to carbamoylphosphate synthetase GI:6552726 from
[Medicago sativa]; contains Pfam profiles PF02786:
Carbamoyl-phosphate synthase L chain ATP binding domain,
PF00289: Carbamoyl-phosphate synthase L chain N-terminal
domain, PF02787: Carbamoyl-phosphate synthetase large
chain oligomerisation domain
Length = 1187
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 259 HGAQRVVRGPLHLVAVRVRGTAQDKRRGR 173
H A V G +HL+ + G A D++ GR
Sbjct: 1105 HAADMVANGQIHLMLITSSGDALDQKDGR 1133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,006,106
Number of Sequences: 28952
Number of extensions: 215510
Number of successful extensions: 881
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -