Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.4  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   7.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.8  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 322 KKGMIPQRLCERDYRC 275
           K+  +P  LC++ YRC
Sbjct: 479 KQDFMPHELCDKYYRC 494


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 179 MLSLQLNDAQKLSNHHKQFVRATLFNFKRQI 87
           + SL L    +L  HHK  +R      KR+I
Sbjct: 47  LFSLSLAQNNQLFTHHKAPIRPVALPPKREI 77


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 286 DYRCQRIHQPMVCCYCC 236
           + +C+RI+    CC  C
Sbjct: 785 EIKCKRIYNEKQCCKNC 801


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 169 SDSMSPTSYNEMENSTD 219
           SDS+SP  Y+E   S D
Sbjct: 192 SDSLSPGIYSEQSLSPD 208


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 301 FVESSLFCCDLYII 342
           F E+SL+C + Y+I
Sbjct: 70  FKEASLYCFNYYVI 83


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 254 HWLMDPLTPVVSLTQSLWNHPFFAVTS 334
           H+   PLT  V L ++ WN    A  S
Sbjct: 234 HFTSLPLTDQVQLLRAGWNELLIAAFS 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,180
Number of Sequences: 336
Number of extensions: 2426
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)